Showing : Cancer • reset
0
votes
0
replies
1.0k
views
Limma: design for a multiple level factor taking into account centre and plate
Microarray Cancer Microarray Cancer
14.9 years ago Daniel Brewer ★ 1.9k
0
votes
0
replies
1.3k
views
Issues running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
14.9 years ago Lorenzo Melchor ▴ 50
0
votes
0
replies
722
views
obtain a list of possible oncogenes from the annotation, packages?
Annotation Cancer Annotation Cancer
14.9 years ago Aedin Culhane ▴ 510
0
votes
0
replies
720
views
Course: Intro to R / Bioc, December 9-10
Cancer Cancer
14.9 years ago Martin Morgan 25k
0
votes
0
replies
1.1k
views
[R] Problems in running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
14.9 years ago James W. MacDonald 68k
0
votes
0
replies
596
views
IRanges
Cancer IRanges Cancer IRanges
14.9 years ago Hervé Pagès 16k
1
vote
1
reply
1.4k
views
IRanges: RangedData rbind error
Cancer Cancer
updated 14.9 years ago by ★ 11k • written 14.9 years ago by ▴ 130
0
votes
1
reply
1.1k
views
beadarray, bash, hulk, excludeBrihtBeadNeighbors, et al -- how to use practically?
Cancer beadarray EBImage Cancer beadarray EBImage
updated 14.9 years ago by ▴ 60 • written 14.9 years ago by ★ 1.1k
0
votes
0
replies
1.5k
views
qPCR Event Calendar - winter 2010
SNP qPCR Genetics Normalization Clustering Regression Cancer Breast Xenopus laevis probe
14.9 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
6
replies
1.8k
views
Best way to get updated annotation for BACs
Microarray Annotation Cancer BAC Microarray Annotation Cancer BAC
updated 15.0 years ago by 21k • written 15.0 years ago by ★ 1.9k
0
votes
0
replies
1.2k
views
Cyclic Loess
Cancer affy Cancer affy
15.0 years ago viritha kaza ▴ 580
0
votes
1
reply
1.1k
views
building annotation package for porcine
Annotation Cancer ChipName genefilter limma AnnotationDbi Annotation Cancer ChipName
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ▴ 270
0
votes
0
replies
837
views
beadarray, bash, hulk, excludeBrihtBeadNeighbors, et al -- how to use practically?
Cancer beadarray Cancer beadarray
15.0 years ago Anand Patel ▴ 60
0
votes
0
replies
1.1k
views
Two Bioinformatics Openings @ the Institute of Cancer
Cancer Cancer
15.0 years ago Claude Chelala ▴ 40
0
votes
1
reply
1.2k
views
GEOquery: Best way to get a phenodata table from GSE
Cancer Cancer
updated 15.0 years ago by 21k • written 15.0 years ago by ★ 1.9k
0
votes
0
replies
1.0k
views
Course: Introduction to R / Bioconductor, Seattle Dec 9 / 10
Cancer Cancer
15.0 years ago Martin Morgan 25k
0
votes
3
replies
865
views
A story about IRanges::GappedRanges ... how does it end?
Cancer IRanges Cancer IRanges
updated 15.0 years ago by ★ 11k • written 15.0 years ago by ★ 13k
0
votes
3
replies
1.1k
views
Combining two CompressedNormalIRangesList objects doesn't work
Cancer IRanges Cancer IRanges
15.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
753
views
Mac binaries for R 2.12 fixed
Cancer Cancer
15.0 years ago Hervé Pagès 16k
0
votes
0
replies
2.0k
views
Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer graph made4 Cancer graph made4
15.0 years ago Aedin Culhane ▴ 510
0
votes
1
reply
1.5k
views
Biobase in R 2.12 referencing libR.dylib from R 2.11, bug?
Cancer Biobase Cancer Biobase
updated 15.0 years ago by 16k • written 15.0 years ago by ▴ 140
0
votes
2
replies
2.3k
views
ArrayExpress: missing cdf environment!
Cancer hgu133a cdf ArrayExpress Cancer hgu133a cdf ArrayExpress
updated 15.0 years ago by ★ 13k • written 15.0 years ago by ▴ 110
0
votes
0
replies
1.5k
views
Job Posting: Scientific Programmer
Sequencing Cancer cdf Sequencing Cancer cdf
15.0 years ago Greg Finak ▴ 240
0
votes
4
replies
1.1k
views
Bug in set operations over IRanges objects with non-NULL elementMetadata()
Cancer Cancer
15.0 years ago Steve Lianoglou ★ 13k
0
votes
5
replies
1.4k
views
Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
GO Cancer GO Cancer
updated 15.0 years ago by ★ 13k • written 15.0 years ago by 25k
0
votes
3
replies
1.4k
views
RMA XPS Problem on MoGene 1.0 ST
Preprocessing Cancer xps Preprocessing Cancer xps
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 20
0
votes
2
replies
717
views
Inconistent behavior with all/any and Rle
Cancer Cancer
updated 15.0 years ago by 25k • written 15.0 years ago by ★ 13k
0
votes
1
reply
645
views
Bug/typo in latest GenomicFeatures (rev 50109)
Cancer Cancer
updated 15.0 years ago by 25k • written 15.0 years ago by ★ 13k
0
votes
1
reply
1.0k
views
Bug in G/IRanges when slicing with an Rle containing only 1 runLength/value
Cancer Cancer
updated 15.0 years ago by 25k • written 15.0 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Flagging overlapping gene exons (was Re: Question about CSAMA10 ...)
Annotation Cancer IRanges GenomicFeatures GenomicRanges Annotation Cancer IRanges
15.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
2.0k
views
BioNet - interpretation of node score (Eva Benito Garagorri)
SNP Microarray GO Network Clustering Cancer Organism mgug4122a probe limma convert SNP
15.1 years ago Daniela Beißer ▴ 20
0
votes
0
replies
802
views
Sources of information about amplified genes in cancer
Cancer Cancer
15.1 years ago Daniel Brewer ★ 1.9k
0
votes
0
replies
745
views
Deadline for submitting a package for BioC 2.7
Cancer Cancer
15.1 years ago Hervé Pagès 16k
0
votes
0
replies
1.1k
views
PICS mm9 mappability map?
Cancer PICS Cancer PICS
15.1 years ago Hamid Bolouri ▴ 90
0
votes
0
replies
603
views
Bioconductor.org to be down Tuesday 14 September
Cancer Cancer
15.1 years ago Dan Tenenbaum ★ 8.2k
2
votes
2
replies
5.7k
views
Genecards v3 access
Cancer Cancer
updated 15.1 years ago by 21k • written 15.1 years ago by ★ 1.9k
0
votes
0
replies
1.4k
views
Postdoctoral Position in Statistical analysis of omics data applied to immunology
Cancer Cancer
15.1 years ago Audrey Kauffmann ▴ 110
0
votes
2
replies
1.5k
views
GenomicRanges countOverlaps error
Cancer GenomicRanges Cancer GenomicRanges
updated 15.1 years ago by ★ 13k • written 15.1 years ago by ▴ 20
0
votes
7
replies
2.3k
views
DNA-Methylation, CopyNumber Results
Normalization Cancer limma copynumber Normalization Cancer limma copynumber
15.1 years ago Ina Hoeschele ▴ 620
0
votes
4
replies
1.4k
views
GOstats::geneIdUniverse() and its relation to organism annotation db's
Annotation GO Cancer GOstats Annotation GO Cancer GOstats
updated 15.1 years ago by ▴ 280 • written 15.1 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Bioinformatician/Software Engineer position available at Umass Medical School
Genetics GO Cancer PROcess Genetics GO Cancer PROcess
15.1 years ago Julie Zhu ★ 4.3k
0
votes
4
replies
1.8k
views
Machine learning, cross validation and gene selection
GO Cancer GO Cancer
updated 15.1 years ago by 6.7k • written 15.1 years ago by ★ 1.9k
0
votes
2
replies
965
views
Did the behavior of as.vector(Rle(some.factor)) change on purpose?
Cancer Cancer
updated 15.1 years ago by 25k • written 15.1 years ago by ★ 13k
1
vote
1
reply
2.1k
views
Biobase: How to replace the ExpressionSet phenoData?
Cancer Cancer
15.1 years ago Daniel Brewer ★ 1.9k
0
votes
6
replies
1.8k
views
Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Cancer Cancer
updated 15.1 years ago by ★ 11k • written 15.1 years ago by ★ 13k
0
votes
5
replies
1.7k
views
A code kata: evening-out *Ranges ends.
Infrastructure Cancer IRanges Infrastructure Cancer IRanges
15.1 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
2.1k
views
endoapply over GRangesList fails when an empty GRanges object is returned (Bug?)
Cancer Cancer
updated 15.1 years ago by ★ 11k • written 15.1 years ago by ★ 13k
0
votes
6
replies
1.3k
views
GenomicRanges:::.similarSeqnameConvention regular expressions needs some tweaking?
Cancer Cancer
15.2 years ago • updated 15.1 years ago Steve Lianoglou ★ 13k
0
votes
7
replies
1.8k
views
xps: root.profile on a asubset of the data
Cancer xps Cancer xps
updated 15.2 years ago by ★ 3.9k • written 15.2 years ago by ★ 1.9k
0
votes
2
replies
2.0k
views
flowCore read.FCS unable to read FlowJo demo data set
Cancer Cancer
updated 15.2 years ago by ▴ 340 • written 15.2 years ago by ▴ 80
1,555 results • Page 13 of 32
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Michael Love 43k
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Locations • All
Barcelona, Spain, 1 hour ago
United States, 3 hours ago
United States, 3 hours ago
Denmark, 4 hours ago
Pittsburgh, United States, 5 hours ago
Traffic: 1404 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6