Showing : Cancer • reset
0
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2
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1.3k
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lumi: estimateMethylationBG problem
Annotation Normalization Cancer probe lumi Annotation Normalization Cancer probe lumi
updated 14.4 years ago by ▴ 620 • written 14.4 years ago by ▴ 440
0
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0
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1.3k
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survcomp: weighted concordance index
Cancer survcomp Cancer survcomp
14.4 years ago Benjamin Haibe-Kains ▴ 20
0
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0
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1.1k
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Job opening in Boston, USA
Sequencing Microarray Cancer Sequencing Microarray Cancer
14.4 years ago Wittner, Ben ▴ 290
0
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4
replies
1.4k
views
IRanges: Request for a "step" argument in runsum
Cancer IRanges genomes Cancer IRanges genomes
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ▴ 100
0
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1
reply
1.1k
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UK Beginner bioconductor courses
Cancer Cancer
updated 14.5 years ago by ▴ 40 • written 14.5 years ago by ★ 1.9k
0
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0
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1.0k
views
BioC 2011 -- Where Software and Biology Connect, Seattle, WA July 28-29
Cancer Cancer
14.5 years ago Martin Morgan 25k
0
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0
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1.2k
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rtracklayer
Coverage Cancer Coverage Cancer
14.5 years ago Michael Lawrence ★ 11k
0
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1
reply
854
views
Output IUPAC genotypes from oligo?
Cancer Cancer
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 260
0
votes
0
replies
1.3k
views
Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
14.5 years ago Harris A. Jaffee ▴ 590
0
votes
0
replies
1.1k
views
Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
14.5 years ago Philippe Serhal ▴ 10
0
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1
reply
1.6k
views
how to do paired t-tests for multiple subgroups [was: warnings or potential problems in limma procedure]
Cancer limma GLAD Category Cancer limma GLAD Category
updated 14.5 years ago by ▴ 100 • written 14.5 years ago by 53k
0
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1
reply
1.5k
views
warnings or potential problems in limma procedure
Cancer limma Category Cancer limma Category
updated 14.5 years ago by ▴ 100 • written 14.5 years ago by 53k
0
votes
0
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833
views
Normalising to Agilent controls in a two-colour experiment
Cancer Cancer
14.5 years ago Daniel Brewer ★ 1.9k
0
votes
0
replies
1.1k
views
[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing Microarray Alignment Annotation Clustering Cancer Biostrings AnnotationDbi
14.5 years ago stefano iacus ▴ 430
0
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0
replies
1.9k
views
Chip-Seq tag density plot
Coverage Cancer Coverage Cancer
14.5 years ago Eva Benito Garagorri ▴ 70
0
votes
7
replies
2.1k
views
read gz compressed wig files?
Cancer rtracklayer Cancer rtracklayer
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 50
0
votes
2
replies
2.2k
views
hgu133plus2hsentrezgprobe install problem
GO Cancer AnnotationDbi GO Cancer AnnotationDbi
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 20
0
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0
replies
1.0k
views
Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
Cancer Cancer
14.5 years ago Martin Morgan 25k
0
votes
3
replies
1.4k
views
Lapply for two GRanges objects?
Sequencing Cancer Sequencing Cancer
updated 14.6 years ago by 25k • written 14.6 years ago by ▴ 260
0
votes
0
replies
1.2k
views
Discrepancies finding genes with a given GO term
GO Cancer Breast biomaRt GO Cancer Breast biomaRt
14.6 years ago Oscar Rueda ▴ 40
0
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1
reply
1.1k
views
pairwiseAlignment generates different outcomes for the same inp...
Alignment Cancer probe Alignment Cancer probe
updated 14.6 years ago by 16k • written 14.6 years ago by ▴ 90
0
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0
replies
1.6k
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[Bioc-sig-seq] SRAdb and getFastq
Cancer convert Cancer convert
14.6 years ago Jack Zhu ▴ 170
0
votes
2
replies
1.9k
views
error in bioconductor installation
Cancer Cancer
updated 14.6 years ago by ▴ 20 • written 14.6 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Call for help about your Chippeakanno R package
Annotation Cancer AnnotationData ChIPpeakAnno Annotation Cancer AnnotationData ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.0k
views
Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
Cancer RdbiPgSQL PROcess Cancer RdbiPgSQL PROcess
updated 14.6 years ago by ▴ 30 • written 14.6 years ago by 25k
0
votes
0
replies
942
views
Where can i find/install package -"BSgenome.Mmusculus.UCSC.mm9" in BSgenome
Cancer Cancer
14.6 years ago Hervé Pagès 16k
0
votes
4
replies
1.8k
views
[R] RCytoscape setPosition error
Network Cancer graph Network Cancer graph
updated 14.7 years ago by ▴ 250 • written 14.7 years ago by ★ 1.1k
0
votes
6
replies
1.1k
views
[somehow-OT] Storing/quickly accessing "genome length" data.
GO Cancer cdf GO Cancer cdf
updated 14.7 years ago by ★ 11k • written 14.7 years ago by ★ 13k
0
votes
10
replies
1.7k
views
c()ombining G/IRanges with elementMetadata: feature inquiry/request
Cancer Cancer
updated 14.7 years ago by ★ 11k • written 14.7 years ago by ★ 13k
0
votes
0
replies
1.4k
views
iFlow and current Bioconductor release
GUI Cancer iFlow GUI Cancer iFlow
14.7 years ago Chao-Jen Wong ▴ 580
0
votes
1
reply
1.2k
views
st 1.0 gene quality measures
Cancer Cancer
updated 14.7 years ago by ▴ 350 • written 14.7 years ago by ★ 2.0k
0
votes
0
replies
1.1k
views
[COURSE ANNOUNCE] CSAMA 2011 Computational Statistics for Genome Biology
Microarray Annotation Cancer Microarray Annotation Cancer
14.7 years ago stefano iacus ▴ 430
0
votes
1
reply
1.2k
views
transformation for illumina methylation beta data prior to input to limma
Cancer limma Cancer limma
updated 14.7 years ago by 21k • written 14.7 years ago by ★ 2.0k
0
votes
0
replies
1.1k
views
[Bioc-devel] Specify supported platforms for a package?
Cancer Rdisop Cancer Rdisop
14.7 years ago Martin Morgan 25k
0
votes
0
replies
631
views
BSgenome package for Stickleback
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
14.7 years ago Hervé Pagès 16k
0
votes
1
reply
1.6k
views
limma Within Array Normalisation By Controls
Annotation Normalization Cancer limma Annotation Normalization Cancer limma
14.7 years ago Gordon Smyth 53k
0
votes
0
replies
789
views
Application of Method of Aryee et al to Illumina methylation Arrays
Microarray Cancer Microarray Cancer
14.7 years ago Richard Friedman ★ 2.0k
0
votes
0
replies
821
views
Bioc course: Advanced R Programming, 17-18 Feb, Seattle
Cancer Cancer
14.8 years ago Martin Morgan 25k
0
votes
1
reply
1.7k
views
[Rocky] - Clarification for finding SNPs at 3'UTR, 5'UTR, CDS genomic regions
SNP Cancer GLAD SNP Cancer GLAD
updated 14.8 years ago by 16k • written 14.8 years ago by ▴ 30
0
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0
replies
797
views
HTqPCR problem
Cancer HTqPCR Cancer HTqPCR
14.8 years ago Heidi Dvinge ★ 2.0k
0
votes
2
replies
1.2k
views
Confused about IRanges::nearest, precede, follow functions/docs.
Cancer Cancer
updated 14.8 years ago by ★ 11k • written 14.8 years ago by ★ 13k
0
votes
0
replies
673
views
HTqPCR problem
Cancer Cancer
14.8 years ago Sandra Romero Cordoba ▴ 10
0
votes
1
reply
738
views
subsetting
Cancer Cancer
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 170
0
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0
replies
1.9k
views
RE : maping SNPs; first foundation challenge offered
SNP Annotation Cancer SNPlocs TranscriptDb biomaRt GenomicFeatures SNP Annotation Cancer
14.8 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
710
views
Introduction into R
Cancer Cancer
updated 14.8 years ago by 6.7k • written 14.8 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Bioinformatics Opening @ Barts Cancer Centre
Cancer biomaRt Cancer biomaRt
14.8 years ago Claude Chelala ▴ 40
0
votes
2
replies
1.3k
views
Rgraphviz running problem on vista
Cancer Rgraphviz Cancer Rgraphviz
updated 14.8 years ago by ▴ 120 • written 14.8 years ago by 25k
0
votes
0
replies
2.0k
views
interactions of range(flowFrame) with transform, densityplot and splom
Cancer flowCore flowViz Cancer flowCore flowViz
14.9 years ago Mroz, Edmund A. ▴ 10
0
votes
2
replies
1.2k
views
rtracklayer issues with other packages?
GO Cancer BSgenome graph Biostrings GOstats BSgenome rtracklayer GO Cancer BSgenome
updated 14.9 years ago by ★ 11k • written 14.9 years ago by ▴ 200
0
votes
9
replies
2.7k
views
Error coerce in AffyQCReport
Cancer Breast affyQCReport Cancer Breast affyQCReport
14.9 years ago Lorenzo Melchor ▴ 50
1,555 results • Page 12 of 32
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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