Showing : Cancer • reset
0
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2
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1.3k
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lumi: estimateMethylationBG problem
Annotation Normalization Cancer probe lumi Annotation Normalization Cancer probe lumi
updated 14.6 years ago by ▴ 620 • written 14.6 years ago by ▴ 440
0
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0
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1.3k
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survcomp: weighted concordance index
Cancer survcomp Cancer survcomp
14.6 years ago Benjamin Haibe-Kains ▴ 20
0
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0
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1.1k
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Job opening in Boston, USA
Sequencing Microarray Cancer Sequencing Microarray Cancer
14.6 years ago Wittner, Ben ▴ 290
0
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4
replies
1.5k
views
IRanges: Request for a "step" argument in runsum
Cancer IRanges genomes Cancer IRanges genomes
updated 14.6 years ago by ★ 11k • written 14.6 years ago by ▴ 100
0
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1
reply
1.1k
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UK Beginner bioconductor courses
Cancer Cancer
updated 14.6 years ago by ▴ 40 • written 14.6 years ago by ★ 1.9k
0
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0
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1.0k
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BioC 2011 -- Where Software and Biology Connect, Seattle, WA July 28-29
Cancer Cancer
14.6 years ago Martin Morgan 25k
0
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0
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1.2k
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rtracklayer
Coverage Cancer Coverage Cancer
14.6 years ago Michael Lawrence ★ 11k
0
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1
reply
883
views
Output IUPAC genotypes from oligo?
Cancer Cancer
updated 14.6 years ago by ★ 4.3k • written 14.6 years ago by ▴ 260
0
votes
0
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1.3k
views
Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
14.6 years ago Harris A. Jaffee ▴ 590
0
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0
replies
1.1k
views
Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
14.6 years ago Philippe Serhal ▴ 10
0
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1
reply
1.7k
views
how to do paired t-tests for multiple subgroups [was: warnings or potential problems in limma procedure]
Cancer limma GLAD Category Cancer limma GLAD Category
updated 14.6 years ago by ▴ 100 • written 14.6 years ago by 53k
0
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1
reply
1.5k
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warnings or potential problems in limma procedure
Cancer limma Category Cancer limma Category
updated 14.6 years ago by ▴ 100 • written 14.6 years ago by 53k
0
votes
0
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855
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Normalising to Agilent controls in a two-colour experiment
Cancer Cancer
14.7 years ago Daniel Brewer ★ 1.9k
0
votes
0
replies
1.1k
views
[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing Microarray Alignment Annotation Clustering Cancer Biostrings AnnotationDbi
14.7 years ago stefano iacus ▴ 430
0
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0
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2.0k
views
Chip-Seq tag density plot
Coverage Cancer Coverage Cancer
14.7 years ago Eva Benito Garagorri ▴ 70
0
votes
7
replies
2.1k
views
read gz compressed wig files?
Cancer rtracklayer Cancer rtracklayer
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 50
0
votes
2
replies
2.2k
views
hgu133plus2hsentrezgprobe install problem
GO Cancer AnnotationDbi GO Cancer AnnotationDbi
updated 14.7 years ago by 6.7k • written 14.7 years ago by ▴ 20
0
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0
replies
1.0k
views
Re(surrecting): [Bioc-sig-seq] Rsamtools countBam labeling
Cancer Cancer
14.7 years ago Martin Morgan 25k
0
votes
3
replies
1.5k
views
Lapply for two GRanges objects?
Sequencing Cancer Sequencing Cancer
updated 14.7 years ago by 25k • written 14.7 years ago by ▴ 260
0
votes
0
replies
1.3k
views
Discrepancies finding genes with a given GO term
GO Cancer Breast biomaRt GO Cancer Breast biomaRt
14.7 years ago Oscar Rueda ▴ 40
0
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1
reply
1.1k
views
pairwiseAlignment generates different outcomes for the same inp...
Alignment Cancer probe Alignment Cancer probe
updated 14.7 years ago by 16k • written 14.7 years ago by ▴ 90
0
votes
0
replies
1.6k
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[Bioc-sig-seq] SRAdb and getFastq
Cancer convert Cancer convert
14.8 years ago Jack Zhu ▴ 170
0
votes
2
replies
1.9k
views
error in bioconductor installation
Cancer Cancer
updated 14.8 years ago by ▴ 20 • written 14.8 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Call for help about your Chippeakanno R package
Annotation Cancer AnnotationData ChIPpeakAnno Annotation Cancer AnnotationData ChIPpeakAnno
14.8 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.0k
views
Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
Cancer RdbiPgSQL PROcess Cancer RdbiPgSQL PROcess
updated 14.8 years ago by ▴ 30 • written 14.8 years ago by 25k
0
votes
0
replies
962
views
Where can i find/install package -"BSgenome.Mmusculus.UCSC.mm9" in BSgenome
Cancer Cancer
14.8 years ago Hervé Pagès 16k
0
votes
4
replies
1.8k
views
[R] RCytoscape setPosition error
Network Cancer graph Network Cancer graph
updated 14.8 years ago by ▴ 250 • written 14.8 years ago by ★ 1.1k
0
votes
6
replies
1.1k
views
[somehow-OT] Storing/quickly accessing "genome length" data.
GO Cancer cdf GO Cancer cdf
updated 14.8 years ago by ★ 11k • written 14.8 years ago by ★ 13k
0
votes
10
replies
1.7k
views
c()ombining G/IRanges with elementMetadata: feature inquiry/request
Cancer Cancer
updated 14.8 years ago by ★ 11k • written 14.8 years ago by ★ 13k
0
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0
replies
1.5k
views
iFlow and current Bioconductor release
GUI Cancer iFlow GUI Cancer iFlow
14.8 years ago Chao-Jen Wong ▴ 580
0
votes
1
reply
1.2k
views
st 1.0 gene quality measures
Cancer Cancer
updated 14.8 years ago by ▴ 350 • written 14.8 years ago by ★ 2.0k
0
votes
0
replies
1.2k
views
[COURSE ANNOUNCE] CSAMA 2011 Computational Statistics for Genome Biology
Microarray Annotation Cancer Microarray Annotation Cancer
14.8 years ago stefano iacus ▴ 430
0
votes
1
reply
1.2k
views
transformation for illumina methylation beta data prior to input to limma
Cancer limma Cancer limma
updated 14.9 years ago by 21k • written 14.9 years ago by ★ 2.0k
0
votes
0
replies
1.1k
views
[Bioc-devel] Specify supported platforms for a package?
Cancer Rdisop Cancer Rdisop
14.9 years ago Martin Morgan 25k
0
votes
0
replies
646
views
BSgenome package for Stickleback
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
14.9 years ago Hervé Pagès 16k
0
votes
1
reply
1.6k
views
limma Within Array Normalisation By Controls
Annotation Normalization Cancer limma Annotation Normalization Cancer limma
14.9 years ago Gordon Smyth 53k
0
votes
0
replies
804
views
Application of Method of Aryee et al to Illumina methylation Arrays
Microarray Cancer Microarray Cancer
14.9 years ago Richard Friedman ★ 2.0k
0
votes
0
replies
841
views
Bioc course: Advanced R Programming, 17-18 Feb, Seattle
Cancer Cancer
14.9 years ago Martin Morgan 25k
0
votes
1
reply
1.7k
views
[Rocky] - Clarification for finding SNPs at 3'UTR, 5'UTR, CDS genomic regions
SNP Cancer GLAD SNP Cancer GLAD
updated 14.9 years ago by 16k • written 14.9 years ago by ▴ 30
0
votes
0
replies
813
views
HTqPCR problem
Cancer HTqPCR Cancer HTqPCR
14.9 years ago Heidi Dvinge ★ 2.0k
0
votes
2
replies
1.2k
views
Confused about IRanges::nearest, precede, follow functions/docs.
Cancer Cancer
updated 14.9 years ago by ★ 11k • written 14.9 years ago by ★ 13k
0
votes
0
replies
685
views
HTqPCR problem
Cancer Cancer
15.0 years ago Sandra Romero Cordoba ▴ 10
0
votes
1
reply
755
views
subsetting
Cancer Cancer
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 170
0
votes
0
replies
1.9k
views
RE : maping SNPs; first foundation challenge offered
SNP Annotation Cancer SNPlocs TranscriptDb biomaRt GenomicFeatures SNP Annotation Cancer
15.0 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
733
views
Introduction into R
Cancer Cancer
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Bioinformatics Opening @ Barts Cancer Centre
Cancer biomaRt Cancer biomaRt
15.0 years ago Claude Chelala ▴ 40
0
votes
2
replies
1.3k
views
Rgraphviz running problem on vista
Cancer Rgraphviz Cancer Rgraphviz
updated 15.0 years ago by ▴ 120 • written 15.0 years ago by 25k
0
votes
0
replies
2.0k
views
interactions of range(flowFrame) with transform, densityplot and splom
Cancer flowCore flowViz Cancer flowCore flowViz
15.0 years ago Mroz, Edmund A. ▴ 10
0
votes
2
replies
1.2k
views
rtracklayer issues with other packages?
GO Cancer BSgenome graph Biostrings GOstats BSgenome rtracklayer GO Cancer BSgenome
updated 15.0 years ago by ★ 11k • written 15.0 years ago by ▴ 200
0
votes
9
replies
2.7k
views
Error coerce in AffyQCReport
Cancer Breast affyQCReport Cancer Breast affyQCReport
15.0 years ago Lorenzo Melchor ▴ 50
1,555 results • Page 12 of 32
Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
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Popular Question to James W. MacDonald 68k
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