Showing : Cancer • reset
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Help on matrix design in Limma - paired samples and two conditions
Cancer limma PROcess Cancer limma PROcess
updated 15.8 years ago by ▴ 350 • written 15.8 years ago by ▴ 10
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949
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转发： 回复： Patent issues of classification algorithms
Microarray Classification Cancer Microarray Classification Cancer
15.8 years ago Martin Morgan 25k
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4
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2.3k
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hgu133plus2cdfSYMBOL not found
Cancer hgu133plus2 probe affy Cancer hgu133plus2 probe affy
updated 15.8 years ago by ▴ 630 • written 15.8 years ago by ▴ 60
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1
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2.0k
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installing xcms package for R 64-bit
GO Cancer cdf xcms GO Cancer cdf xcms
updated 15.9 years ago by ▴ 10 • written 15.9 years ago by ▴ 40
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SPIA, hacked to run with only selected pathways
SystemsBiology Pathways Cancer SPIA SystemsBiology Pathways Cancer SPIA
15.9 years ago Tarca, Adi ▴ 570
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2
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1.7k
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Query related to topGene functionality in RankProd library.
Cancer probe RankProd Cancer probe RankProd
updated 15.9 years ago by ▴ 20 • written 15.9 years ago by ▴ 20
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2
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1.6k
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genereating correlation matrix from gene expression data
Cancer Cancer
updated 15.9 years ago by ★ 3.4k • written 15.9 years ago by ▴ 120
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550
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Wanted : Postdoctoral Bioinformatician , Statistical Geneticist
Cancer Cancer
15.9 years ago Paul Leo ▴ 970
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1
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749
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Grid layout to data.frame with row & colums
Cancer convert Cancer convert
updated 15.9 years ago by 68k • written 15.9 years ago by ★ 1.9k
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2
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950
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xps - hugene 1.0 st quality assessment?
GO Cancer GO Cancer
15.9 years ago Tokuyasu, Taku ▴ 20
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728
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comparing Limma output from 2 different pre-processing methods
Cancer limma Cancer limma
15.9 years ago Martha Behnke ▴ 100
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830
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comparing Limma output from 2 different pre-processing methods
Cancer limma Cancer limma
15.9 years ago Jenny Drnevich ★ 2.0k
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1.4k
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Agilent miRNA -gProcessedSignal
Microarray Cancer Microarray Cancer
15.9 years ago uthra suresh ▴ 10
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3
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1.7k
views
Gene list ideogram
Cancer Cancer
updated 15.9 years ago by 6.7k • written 15.9 years ago by ★ 1.9k
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Job openings in Boston, MA, USA
Sequencing Microarray Cancer Sequencing Microarray Cancer
16.0 years ago Wittner, Ben ▴ 290
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1.5k
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Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
16.0 years ago Reek, J. ▴ 10
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1.1k
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BioC Course Nov 18-20: High throughput sequencing analysis tools and approaches
Cancer Cancer
16.0 years ago Patrick Aboyoun ★ 1.6k
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3
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1.8k
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
16.0 years ago mauede@alice.it ▴ 870
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2
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2.9k
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flowCore: inverse logicle transformation of flow cytometry data
Cancer convert flowCore Cancer convert flowCore
updated 16.0 years ago by ▴ 340 • written 16.0 years ago by ▴ 140
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1.1k
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flowCore: inverse logicle transformation of flow cytometry data
GO Cancer flowCore GO Cancer flowCore
16.0 years ago Nishant Gopalakrishnan ▴ 340
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1
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1.2k
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flowCore: inverse logicle transformation of flow cytometry data
GO Cancer flowCore GO Cancer flowCore
updated 16.0 years ago by ▴ 50 • written 16.0 years ago by ▴ 340
0
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1
reply
999
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flowCore: inverse logicle transformation of flow cytometry data
Cancer flowCore Cancer flowCore
updated 16.0 years ago by ▴ 340 • written 16.0 years ago by ▴ 50
0
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0
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891
views
New Bioconductor team member
Cancer Cancer
16.0 years ago Martin Morgan 25k
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1.2k
views
lumi package
Cancer lumi BUS Cancer lumi BUS
16.0 years ago Weiwei Shi ★ 1.2k
0
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5
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1.6k
views
failure to install: aCGH depends on unavailable package
aCGH Cancer aCGH aCGH Cancer aCGH
updated 16.1 years ago by ★ 1.6k • written 16.1 years ago by ★ 1.1k
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2
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1.4k
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exon array annotation files
Annotation Cancer cdf exonmap Annotation Cancer cdf exonmap
updated 16.1 years ago by ▴ 190 • written 16.1 years ago by ▴ 970
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2
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1.3k
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lumi and Affy bgadjust
Normalization Cancer lumi Normalization Cancer lumi
updated 16.1 years ago by ▴ 10 • written 16.1 years ago by ★ 1.2k
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1
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784
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bioconductor.org will be down on Friday 18 noon-1pm Seattle time
Cancer Cancer
16.1 years ago Hervé Pagès 16k
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1
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770
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Technical Replicates with Affymetrix Exon Arrays
Cancer Breast Cancer Breast
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 200
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1.1k
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BioC 2010 European Developers' meeting
Sequencing Cancer Sequencing Cancer
16.1 years ago Crispin Miller ★ 1.1k
0
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836
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Now you can smoke anywhere you want!
Cancer safe Cancer safe
16.1 years ago inLife E-Cigarettes ▴ 10
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5
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1.7k
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IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function
Cancer IRanges Cancer IRanges
16.1 years ago Steve Lianoglou ★ 13k
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864
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You Don't Have to Quit Smoking. New Technology!
Cancer safe Cancer safe
16.1 years ago inLife E-Cigarettes ▴ 10
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1
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1.6k
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Fred Hutchinson Cancer Research Center - Systems Analyst/Programmer III/IV (AD-22564)
Cancer Cancer
16.1 years ago Duran, Alysha M ▴ 20
0
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1
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959
views
Neural networks.
Network Cancer Network Cancer
updated 16.1 years ago by ★ 13k • written 16.1 years ago by ▴ 20
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1.2k
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local and remote biomaRt problems
Cancer biomaRt Cancer biomaRt
16.1 years ago Daniel Rico ▴ 110
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2
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1.2k
views
KEGGSOAP returning blank pages
Cancer KEGGSOAP Cancer KEGGSOAP
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ★ 1.9k
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1.1k
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"unexpected" result from IRanges::intersect
Cancer IRanges Cancer IRanges
updated 16.2 years ago by ★ 1.6k • written 16.2 years ago by ★ 13k
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2
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1.5k
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edgeR: deDGE Fisher exact p-values
Cancer edgeR Cancer edgeR
updated 16.2 years ago by ★ 1.1k • written 16.2 years ago by ★ 1.9k
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2
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1.4k
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OT: van 't Veer (2002) classifier
Classification Cancer Breast Classification Cancer Breast
updated 16.2 years ago by ★ 1.3k • written 16.2 years ago by ▴ 110
0
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1
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707
views
BioC 2.5 and BSgenome.Hsapiens.UCSC.hg19
Cancer Cancer
updated 16.2 years ago by 16k • written 16.2 years ago by ★ 13k
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1.1k
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Access densities in MAList object
Cancer Cancer
16.2 years ago Torsten Waldminghaus ▴ 80
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0
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998
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Bsgenome Zv7 sequence data
Cancer Danio rerio zebrafish Cancer Danio rerio zebrafish
16.2 years ago Hervé Pagès 16k
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0
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765
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GWAS and gene expression datasets for same cases?
Cancer Cancer
16.2 years ago Tim Smith ★ 1.1k
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0
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876
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[Fwd: [Genome-announce] Note on human mitochondrial sequence in hg19]
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
16.2 years ago Hervé Pagès 16k
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1.1k
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POSTDOC in SYSTEMS GENETICS at Cancer Research UK Cambridge Research Institute
Genetics Cancer Breast Lung Genetics Cancer Breast Lung
16.2 years ago Florian Markowetz ▴ 20
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0
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706
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BSGenomeForge
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
16.2 years ago Hervé Pagès 16k
0
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5
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2.0k
views
Software to find the area of a shape in an image
Cancer Cancer
updated 16.2 years ago by ▴ 350 • written 16.2 years ago by ★ 1.9k
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2
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1.5k
views
BiomaRt error
Cancer biomaRt Cancer biomaRt
updated 16.2 years ago by ▴ 600 • written 16.2 years ago by ▴ 510
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1
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1.6k
views
CellHTS Replicates Missing
Cancer cellHTS2 Cancer cellHTS2
updated 16.2 years ago by ▴ 540 • written 16.2 years ago by ▴ 40
1,555 results • Page 16 of 32
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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