Showing : Cancer • reset
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1.1k
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Error: formal argument "envir" matched by multiple actual arguments
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 10
0
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0
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629
views
REVISED BioC 2010 Scholarship Application due date
Cancer Cancer
15.4 years ago Martin Morgan 25k
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0
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1.2k
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status of the DAVIDQuery package
Cancer DAVIDQuery Cancer DAVIDQuery
15.4 years ago Day, Roger S ▴ 60
0
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0
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752
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BioC 2010 Afternoon Practical Proposals
Cancer Cancer
15.4 years ago Martin Morgan 25k
0
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1
reply
1.9k
views
LIMMA: Suitable measure of error from result object. stdev.unscaled?
Microarray Cancer limma Microarray Cancer limma
updated 15.4 years ago by 53k • written 15.4 years ago by ★ 1.9k
0
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8
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2.1k
views
ChIPpeakAnno Strandedness and distance calculation
Annotation Cancer ChIPpeakAnno Annotation Cancer ChIPpeakAnno
updated 15.4 years ago by ★ 1.6k • written 15.4 years ago by ★ 4.3k
0
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0
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843
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LIMMA: data with technical replicate/familial relationship/biological replicate
Cancer limma Cancer limma
15.4 years ago Steve Lianoglou ★ 13k
0
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3
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1.7k
views
Bug (?) in IRanges::findOverlaps(self, ignoreSelf=TRUE, ignoreRedundat=TRUE)
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
15.4 years ago Steve Lianoglou ★ 13k
0
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0
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1.0k
views
pint (& segmentation)
aCGH Preprocessing Cancer aCGH pint aCGH Preprocessing Cancer aCGH pint
15.4 years ago Leo Lahti ▴ 10
0
votes
2
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1.2k
views
IRanges bug? Running do.cal("c", list.of.IRanges.objects)
Cancer IRanges Cancer IRanges
updated 15.4 years ago by ★ 1.6k • written 15.4 years ago by ★ 13k
0
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0
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2.5k
views
Two bioinformatics positions in Bordeaux, France
SNP Sequencing Genetics Cancer Breast SNP Sequencing Genetics Cancer Breast
15.4 years ago Audrey Kauffmann ▴ 110
0
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3
replies
1.4k
views
pint
Cancer pint Cancer pint
15.4 years ago Raquel Mart’inez Garc’ia ▴ 50
0
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2
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1.3k
views
Manipulating large DNAStringSet(s)
GO Cancer BSgenome BSgenome GO Cancer BSgenome BSgenome
updated 15.4 years ago by 16k • written 15.5 years ago by ★ 13k
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0
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1.1k
views
Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
15.5 years ago Daniel Brewer ★ 1.9k
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0
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704
views
rtracklayer - getTable
Cancer rtracklayer Cancer rtracklayer
15.5 years ago Michael Lawrence ★ 11k
0
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1
reply
1.0k
views
rtracklayer - getTable
Cancer Cancer
updated 15.5 years ago by ★ 11k • written 15.5 years ago by ▴ 10
0
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2
replies
1.7k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer BSgenome SNPlocs BSgenome Cancer BSgenome SNPlocs BSgenome
15.5 years ago Hervé Pagès 16k
0
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1
reply
1.2k
views
Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 15.5 years ago by 68k • written 15.5 years ago by ★ 2.0k
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0
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893
views
BioC 2010, July (28), 29 and 30
Cancer Cancer
15.5 years ago Martin Morgan 25k
0
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0
replies
1.0k
views
Advanced R Programming for Bioinformatics, May 20-21
Cancer Cancer
15.5 years ago Martin Morgan 25k
0
votes
2
replies
918
views
Recycling vars with IRanges::reflect
Cancer IRanges Cancer IRanges
updated 15.5 years ago by ★ 1.6k • written 15.5 years ago by ★ 13k
0
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1
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1.0k
views
building annotation package for porcine
Annotation Cancer genefilter limma Annotation Cancer genefilter limma
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 840
0
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0
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1.1k
views
request: calculate coverage with weight on RangedData object
Coverage Cancer IRanges Coverage Cancer IRanges
15.6 years ago Janet Young ▴ 740
3
votes
2
replies
4.1k
views
Limma and logistic regression
Microarray Cancer limma Microarray Cancer limma
updated 15.6 years ago by ▴ 340 • written 15.6 years ago by ★ 1.9k
0
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1
reply
1.1k
views
clusterStab using a correlation distance
Microarray Cancer clusterStab Microarray Cancer clusterStab
updated 15.6 years ago by 68k • written 15.6 years ago by ★ 1.9k
0
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0
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731
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question about forgeBSgenomeDataPkg function
Cancer BSgenome BSgenome IRanges Cancer BSgenome BSgenome IRanges
15.6 years ago Hervé Pagès 16k
0
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0
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835
views
A question about org.Hs.egMAPCOUNTS
GO Cancer GO Cancer
15.6 years ago Hervé Pagès 16k
0
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1
reply
1.2k
views
IRanges RangedData - possible bug?
Cancer Cancer
updated 15.6 years ago by ★ 1.6k • written 15.6 years ago by ▴ 740
0
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1
reply
1.2k
views
limma and Rank Products: comparison of the number of results
Cancer limma Cancer limma
updated 15.7 years ago by ▴ 750 • written 15.7 years ago by ▴ 510
0
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1
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1.5k
views
shared library 'Rgraphviz' not found
Cancer Rgraphviz Cancer Rgraphviz
updated 15.7 years ago by ▴ 40 • written 15.7 years ago by 25k
0
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0
replies
1.6k
views
Bioinformatics faculty positions at M.D. Anderson
Cancer Cancer
15.7 years ago Kevin Coombes ▴ 430
0
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2
replies
1.4k
views
cvArray error from AgiMicroRna package
Cancer microRNA Cancer microRNA
15.7 years ago Daniel Brewer ★ 1.9k
0
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0
replies
718
views
rma.background.correct produces lots of NaNs for one array
Cancer Cancer
15.7 years ago Daniel Brewer ★ 1.9k
0
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6
replies
2.3k
views
Normalisation of Agilent microRNA arrays using inbuilt controls?
GO Cancer vsn AgiMicroRna GO Cancer vsn AgiMicroRna
updated 15.7 years ago by ★ 3.6k • written 15.7 years ago by ★ 1.9k
0
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0
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1.0k
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[BIOC COURSE] CSAMA10 - 14-18/June/2010 - Brixen (Italy)
Microarray Annotation Cancer Microarray Annotation Cancer
15.7 years ago stefano iacus ▴ 430
0
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0
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1.3k
views
Installing problems of Flow Cytometry on Ubuntu
Cancer flowMerge iFlow Cancer flowMerge iFlow
15.7 years ago Josef Spidlen ▴ 140
0
votes
0
replies
956
views
Updated new package submission process
Cancer PROcess Cancer PROcess
15.7 years ago Martin Morgan 25k
0
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1
reply
819
views
Rgraphviz installation: DLL problem?
Cancer Rgraphviz Cancer Rgraphviz
updated 15.7 years ago by ▴ 40 • written 15.7 years ago by 25k
0
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0
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843
views
Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO Cancer ChipName probe genefilter PROcess Annotation GO Cancer ChipName
15.7 years ago Suyog Pol ▴ 40
0
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0
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1.1k
views
Packages to query/process TCGA data?
Cancer Cancer
15.7 years ago Tim Smith ★ 1.1k
0
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0
replies
1.0k
views
Any way to ouput the reordered gene list from heatmap.2()?
Cancer made4 ASSIGN Cancer made4 ASSIGN
15.7 years ago Steve Lianoglou ★ 13k
0
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4
replies
1.2k
views
findOveraps suggestions
Cancer IRanges Cancer IRanges
updated 15.7 years ago by ★ 11k • written 15.7 years ago by ▴ 740
0
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5
replies
2.0k
views
Best options for cross validation machine learning
Microarray Clustering Cancer Microarray Clustering Cancer
updated 15.7 years ago by ▴ 450 • written 15.7 years ago by ★ 1.9k
0
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2
replies
1.0k
views
problem with lumiRatAll.db
Annotation Cancer probe annotate lumi Annotation Cancer probe annotate lumi
updated 15.7 years ago by ▴ 300 • written 15.7 years ago by ▴ 20
0
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0
replies
968
views
exonmap unexpected results?
Annotation GO Cancer Annotation GO Cancer
15.7 years ago Paul Leo ▴ 970
0
votes
0
replies
2.0k
views
Job posting (Bioinformatics Analyst)
miRNA Normalization Cancer miRNA Normalization Cancer
15.8 years ago Christos Hatzis ▴ 90
0
votes
0
replies
825
views
Is color.pathway.by.objects (KEGGSOAP) working?
Cancer Cancer
15.8 years ago John Zhang ★ 2.9k
0
votes
2
replies
1.1k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf Cancer cdf
updated 15.8 years ago by ▴ 950 • written 15.8 years ago by 25k
0
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0
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1.4k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
15.8 years ago James W. MacDonald 68k
0
votes
0
replies
1.2k
views
Fwd: [R] Question to use R plot GO pie chart
GO Cancer Category GO Cancer Category
15.8 years ago Waverley @ Palo Alto ▴ 10
1,555 results • Page 15 of 32
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Comment: GOseq Probability Weight Function bad fit by tree • 0
Capture the velocity of digital innovation when you [see what's trending in tech at DualMedia News][1] tracking emerging computational para…
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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