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JOB: Cancer Research UK - Cambridge Research Institute Bioinformatics Core
Sequencing Microarray Cancer Sequencing Microarray Cancer
16.2 years ago Mark Dunning ★ 1.1k
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PRO-NEST postdoc position PHILIPS RESEARCH. prostate cancer functional biomarker validation (www.pro-nest.com)
Cancer Prostate Cancer Prostate
16.3 years ago Paul Hammer ▴ 220
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1.4k
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CGHregions error
Cancer CGHcall CGHregions Cancer CGHcall CGHregions
16.3 years ago Daniel Rico ▴ 110
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733
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[Bioc-sig-seq] Error in assign while calling the vmatchPattern function
Cancer Cancer
16.3 years ago Hervé Pagès 16k
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1.4k
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Job Opportunity at IMP, Vienna, Austria
Cancer Cancer
16.3 years ago Ido M. Tamir ▴ 150
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1.1k
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Illumina 610 Quad SNP chips
SNP Cancer Colon SNP Cancer Colon
16.3 years ago Dmitri Mouradov ▴ 20
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2.0k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
16.3 years ago Joern Toedling ▴ 450
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11
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3.7k
views
Venn Diagram
Cancer ABarray Cancer ABarray
updated 16.3 years ago by ▴ 450 • written 16.3 years ago by 16k
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4
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1.7k
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Missing Autocorrelation in Ringo
Annotation Cancer Ringo Annotation Cancer Ringo
updated 16.3 years ago by ▴ 450 • written 16.3 years ago by ▴ 80
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4
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1.7k
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Oligo error on OS X Leopard
Cancer oligo Cancer oligo
updated 16.3 years ago by 6.7k • written 16.3 years ago by ★ 1.9k
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1.2k
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ANNOUNCEMENT: 20% discount on the most recent bioconductor/R books from Chapman & Hall/CRC!
Cancer PROcess Cancer PROcess
16.3 years ago Calver, Rob ▴ 10
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4
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2.1k
views
GSEABase on none affy data/mapping problem(?)
Annotation GO Cancer probe affy Annotation GO Cancer probe affy
updated 16.3 years ago by 25k • written 16.3 years ago by ▴ 40
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1
reply
903
views
Error in assign while calling the vmatchPattern function
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 16.3 years ago by ★ 2.4k • written 16.3 years ago by 16k
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Change M-value calculation from red/green to green/red
Microarray Normalization Cancer limma Microarray Normalization Cancer limma
16.4 years ago Gordon Smyth 53k
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2
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790
views
missing content in limma documentation pdf
Cancer limma Cancer limma
updated 16.4 years ago by 25k • written 16.3 years ago by ▴ 80
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2
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1.5k
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Change M-value calculation from red/green to green/red
Microarray Normalization Cancer limma Microarray Normalization Cancer limma
updated 16.4 years ago by ★ 3.4k • written 16.4 years ago by ▴ 80
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1
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1.4k
views
FW: biomaRt not working?
GO Cancer BSgenome biomaRt BSgenome GO Cancer BSgenome biomaRt BSgenome
16.4 years ago john seers IFR ▴ 810
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1.2k
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biomaRt not working?
GO Cancer BSgenome biomaRt BSgenome GO Cancer BSgenome biomaRt BSgenome
16.4 years ago john seers IFR ▴ 810
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0
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701
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Installation of a custom cdf hs133phsentrezgcdf
Cancer hgu133plus2 cdf Cancer hgu133plus2 cdf
16.4 years ago Martin Morgan 25k
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2.6k
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How to plot gene on their chromosome?
Annotation Cancer geneplotter idiogram rtracklayer Annotation Cancer geneplotter idiogram
16.4 years ago Martin Morgan 25k
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1.5k
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Simple beadarraySNP analysis
SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer
16.4 years ago Dmitri Mouradov ▴ 20
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3
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6.2k
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upregulated or downregulated?
Cancer limma Cancer limma
updated 16.4 years ago by ▴ 400 • written 16.4 years ago by ▴ 20
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3
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1.5k
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problem with biocLite("Biobase") -- results in looping of download
Cancer Biobase Cancer Biobase
updated 16.4 years ago by ▴ 830 • written 16.4 years ago by 25k
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0
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1.8k
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LIMMA contrast matrix for three-way ANOVA with many comparisons
Cancer limma Cancer limma
16.4 years ago Levi Waldron ★ 1.1k
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2
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1.1k
views
mislinked task views?
Cancer Category Cancer Category
updated 16.4 years ago by 6.7k • written 16.4 years ago by ▴ 180
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.4 years ago Min-Han Tan ▴ 40
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4
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1.9k
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snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 16.4 years ago by ▴ 160 • written 16.4 years ago by ★ 1.1k
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5
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Finding differentially expressed genes using Ebayes
Cancer Cancer
updated 16.4 years ago by 68k • written 16.4 years ago by ▴ 90
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732
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limma design, 3 biological reps (two with a tech rep, one without)
Cancer limma Cancer limma
16.4 years ago Ryan Basom ▴ 20
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3
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1.6k
views
flowClust results in subset filters
Cancer flowCore flowClust Cancer flowCore flowClust
updated 16.5 years ago by ▴ 50 • written 16.5 years ago by ▴ 540
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954
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KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
16.5 years ago Daniel Brewer ★ 1.9k
0
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1.0k
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
16.5 years ago Ben Madin ▴ 20
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3
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6.5k
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multiple ColSideColors-type annotations on a heatmap
Cancer annotate Cancer annotate
updated 16.5 years ago by ▴ 610 • written 16.5 years ago by ★ 1.1k
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1.1k
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Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
16.5 years ago Hervé Pagès 16k
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0
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2.2k
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Post Doc position, Berlin Germany
Sequencing Microarray Proteomics Pathways Network Cancer Sequencing Microarray Proteomics
16.5 years ago Paul Hammer ▴ 220
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1
reply
1.0k
views
GenomeGraphs
Cancer graph Cancer graph
updated 16.5 years ago by ▴ 970 • written 16.5 years ago by ▴ 140
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2
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1.2k
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Problem loading data for Agi4x44PreProcess
Cancer Agi4x44PreProcess Cancer Agi4x44PreProcess
16.5 years ago Bernal-Mizrachi, Leon ▴ 50
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1.4k
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RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL Cancer RdbiPgSQL
16.5 years ago John Zhang ★ 2.9k
0
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1
reply
864
views
Best way to find genes that represent a group
Microarray Cancer limma Microarray Cancer limma
updated 16.5 years ago by 21k • written 16.5 years ago by ★ 1.9k
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4
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1.2k
views
How to get a development version of a package?
Cancer Cancer
16.5 years ago Daniel Brewer ★ 1.9k
0
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7
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4.2k
views
Visualise KEGG pathway and highlight genes
Cancer KEGGgraph Cancer KEGGgraph
updated 16.5 years ago by ▴ 140 • written 16.5 years ago by ★ 1.9k
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1
reply
1.0k
views
KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ★ 1.9k
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3
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1.6k
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evaluating a character string as a variable name in an ExpressionSet object
Cancer Cancer
16.5 years ago Martin Morgan 25k
0
votes
6
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11k
views
Gene symbol to KEGG gene ids
Annotation Cancer Annotation Cancer
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ★ 1.9k
0
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2
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1.2k
views
Mapping chromosome and nucleotide position to gene name
Cancer Breast Cancer Breast
updated 16.5 years ago by ★ 13k • written 16.5 years ago by ▴ 310
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2
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1.3k
views
How to check if gene name is an alias or misspelt
Cancer Cancer
updated 16.5 years ago by 16k • written 16.5 years ago by ★ 1.9k
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0
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870
views
How to check if gene name is an alias or misspelt
Cancer convert Cancer convert
16.5 years ago Gordon Smyth 53k
0
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1
reply
1.5k
views
flowCore / flowViz: densityplot of FCS file without time channel
Cancer Cancer
updated 16.5 years ago by ▴ 540 • written 16.5 years ago by ▴ 80
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2
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1.1k
views
KEGG analysis
Network Cancer Network Cancer
16.5 years ago Daniel Brewer ★ 1.9k
0
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0
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609
views
[Fwd: [biocore] Rgraphviz on 64bit systems]
Cancer Rgraphviz Cancer Rgraphviz
16.5 years ago rgentleman ★ 5.5k
1,555 results • Page 17 of 32
Recent ...
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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