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GO Term2entrezgene
Category Category
updated 17.1 years ago by 21k • written 17.1 years ago by ★ 1.2k
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Category for Illumina transcripts
Category Category
17.2 years ago Lana Schaffer ★ 1.3k
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dev2bitmap error, 'gs' cannot be found
hgu133plus2 Category hgu133plus2 Category
17.4 years ago Boel Brynedal ▴ 200
0
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Categories microarray data in functional profiles
Microarray Annotation GO Category Microarray Annotation GO Category
17.4 years ago Marcelo Laia ▴ 450
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961
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GOstats gene set size selection
Microarray GO GOstats Category Microarray GO GOstats Category
17.6 years ago alex lam RI ▴ 30
0
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6
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2.9k
views
problem with GOHyperGParams in package Category
Annotation GO GOstats Category Annotation GO GOstats Category
updated 17.7 years ago by ▴ 570 • written 17.7 years ago by ▴ 830
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
17.8 years ago Vincent J. Carey, Jr. 6.7k
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2
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1.4k
views
hyperGTest and HyperGParams
Microarray Annotation GLAD Category Microarray Annotation GLAD Category
updated 18.1 years ago by ★ 5.5k • written 18.1 years ago by ▴ 500
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1
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1.3k
views
Arabidopsis GO Pie Charts
goTools Category goTools Category
18.1 years ago Naomi Altman ★ 6.0k
0
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4
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2.6k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 18.2 years ago by ▴ 500 • written 18.2 years ago by ★ 1.4k
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2
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1.3k
views
stat/math question on Category vignette
Pathways Category Pathways Category
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 890
0
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1
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1.1k
views
Limma: Ignoring sample in differential analysis
Cancer limma Category Cancer limma Category
updated 18.3 years ago by ▴ 470 • written 18.3 years ago by ★ 1.9k
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0
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1.2k
views
Input for KS test
Genetics GO GOstats Category topGO Genetics GO GOstats Category topGO
18.4 years ago Ken Termiso ▴ 250
0
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11
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2.5k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 260
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4
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1.3k
views
cateGOry error
GO Category GO Category
updated 18.5 years ago by ★ 13k • written 18.5 years ago by ▴ 260
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0
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1.1k
views
PFAM annotation from HyperG
Pathways annotate Category Pathways annotate Category
18.5 years ago Dario Greco ▴ 310
0
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9
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2.5k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
0
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2
replies
1.2k
views
dye effects stronger than dye-swaps?
Microarray Normalization Category Microarray Normalization Category
updated 18.6 years ago by ★ 6.0k • written 18.6 years ago by ★ 2.2k
0
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6
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1.9k
views
hyperGTest
GO Cancer GOstats Category GO Cancer GOstats Category
updated 18.6 years ago by ★ 6.0k • written 18.6 years ago by ★ 7.4k
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0
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1.3k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
18.6 years ago Paquet, Agnes ▴ 500
0
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3
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2.3k
views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 18.7 years ago by 68k • written 18.7 years ago by ★ 2.2k
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0
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777
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Category/ summery student project
Category Category
18.7 years ago Simon Lin ▴ 270
0
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2
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2.0k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
18.8 years ago Mark W Kimpel ▴ 830
0
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1
reply
1.5k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 300
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6
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2.2k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 310
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2
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1.9k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 890
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7
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1.8k
views
Odds Ratio in GOstat [resolved?]
GOstats Category GOstats Category
updated 19.0 years ago by ★ 6.0k • written 19.0 years ago by ★ 7.4k
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5
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2.2k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 890
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0
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1.3k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
19.0 years ago Kimpel, Mark W ▴ 890
0
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3
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2.4k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 350
0
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1
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927
views
about packages GO, Gostats,...
GO GOstats Category GO GOstats Category
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 70
0
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0
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767
views
How to create a MAList or ExprSet object from a matrix
Normalization Preprocessing probe Category Normalization Preprocessing probe Category
19.3 years ago Jenny Drnevich ★ 2.2k
0
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1
reply
1.3k
views
GO annotation inconsistency
Annotation GO probe Category Annotation GO probe Category
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 70
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0
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1.4k
views
blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
19.5 years ago Pedro López Romero ▴ 360
0
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1
reply
1.1k
views
Multtest
probe Category probe Category
updated 19.7 years ago by ★ 1.0k • written 19.7 years ago by ▴ 30
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1
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1.3k
views
Issues with BioC GO annotations and NetAffx
Annotation GO probe affy PROcess GOstats Category Annotation GO probe affy PROcess
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 110
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3
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1.7k
views
grep GOID, R problem or my problem?
GO affy Category GO affy Category
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by ▴ 810
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1
reply
900
views
Category package problems with Vignette documentation
Microarray hgu95av2 Category Microarray hgu95av2 Category
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 20
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1
reply
1.2k
views
Limma and Genepix
limma Category limma Category
updated 20.5 years ago by 53k • written 20.5 years ago by ▴ 40
0
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6
replies
1.6k
views
where to start?
Classification Clustering Category Classification Clustering Category
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 40
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0
replies
794
views
How to start?
Classification Clustering Category Classification Clustering Category
20.6 years ago Malik Yousef ▴ 40
0
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3
replies
1.3k
views
Trouble using GOstats
GO hgu133a Category GO hgu133a Category
updated 20.7 years ago by ★ 5.5k • written 20.7 years ago by ▴ 80
0
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4
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1.9k
views
Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy PROcess Category cycle Annotation GO annotate affy PROcess
updated 20.8 years ago by ▴ 310 • written 20.8 years ago by ▴ 250
0
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1
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1.2k
views
Affy mas5calls on Hu6800 arrays
Cancer hu6800 probe affy Category Cancer hu6800 probe affy Category
21.1 years ago • updated 21.0 years ago Stronach, Euan A ▴ 20
0
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1
reply
1.1k
views
how to exrtact col. names from exprs()
GO Category GO Category
updated 21.3 years ago by ★ 1.8k • written 21.3 years ago by ▴ 320
0
votes
1
reply
911
views
GoHyperG question
GO GOstats Category GO GOstats Category
updated 21.3 years ago by ★ 2.9k • written 21.3 years ago by ▴ 10
0
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0
replies
1.5k
views
Re: KNN, SVM, and randomForest - How to predict testing set without known categories (affy data)
Microarray Clustering Category Microarray Clustering Category
21.3 years ago Kasper Daniel Hansen ▴ 630
0
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1
reply
1.9k
views
KNN, SVM, and randomForest - How to predict testing set without known categories (affy data)
Microarray Clustering Category Microarray Clustering Category
updated 21.3 years ago by ★ 1.8k • written 21.3 years ago by ▴ 120
0
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2
replies
1.7k
views
KNN, SVM, and randomForest - How to predict test without known categories
Category Category
updated 21.3 years ago by ★ 1.8k • written 21.3 years ago by ▴ 120
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0
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1.5k
views
KNN, SVM, and randomForest - How to predict test without known categories (affy data)
Microarray Category Microarray Category
21.3 years ago Liu, Xin ▴ 120
159 results • Page 3 of 4
Recent ...
Replies
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Answer: p.adjust BH Question by Gordon Smyth 53k
Duplicate of https://support.bioconductor.org/p/41077/
Answer: Large logFC but somewhat high FDR by Gordon Smyth 53k
Glad you're getting good use out of the package. The results that you show seem pretty much as one would expect, with nothing surprising. …
Comment: After running samtools, the featureCounts command crashed. by MarcHintz99 • 0
Thanks for shairng https://subread.sourceforge.net/
Comment: Senior Teaching Fellow (MSc Computational Biomedicine) by eja.ger.m • 0
Opportunities like this remind me how digital learning is evolving, much like modern mobile games. With programmes becoming fully online an…
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Awards • All
Popular Question to story.benjamin ▴ 20
Popular Question to shepherl 4.2k
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