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CellRanger
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714
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Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
11 months ago
rocanja
▴ 60
0
votes
0
replies
801
views
Read Cellranger outputs in R, combine as SingleCellExperiment
ReadInR
Cellranger
GEX+Features+VDJ
3.1 years ago
gregoire.destreel
• 0
0
votes
1
reply
1.3k
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Aberrant number of cells
CellBarcode
DropletUtils
emptyDrops()
Cellranger
scRNAseq
updated 2.8 years ago by
rohitsatyam102
▴ 20 • written 3.1 years ago by
gregoire.destreel
• 0
7
votes
12
replies
8.2k
views
How to identify real cells in 10X RNA-seq ?
single-cell
10X
Cell calling
DropletUtils
cellranger
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
xingxd16
▴ 20
4 results • Page
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Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Hello again, Can using inSilicoMerging handle this situation?
Answer: normalizatino of dna methylation EPIC data
by
James W. MacDonald
68k
Your code doesn't show the error? Anyway, the default for `colMeans2` is useNames = TRUE, and the call to `colMeans2` in `preprocessNoob…
Answer: WGCNA
by
James W. MacDonald
68k
This support site is meant to help people with technical questions about using Bioconductor packages, rather than as a place to get analysi…
Answer: EuroBioC2023 abstract submission is open!
by
cirwin009
• 0
Submit here https://openreview.net/group?id=bioconductor.org/EuroBioC/2023/ [Block Blast][1] This article offers a thorough and in-depth…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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