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ChemmineR
•
reset
1
vote
4
replies
2.1k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 6.2 years ago by
Joris.Meys
• 0
2
votes
6
replies
1.1k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 5.1 years ago by
khoran
• 0 • written 5.2 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
905
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
5.2 years ago
Anthony Nash
▴ 20
1
vote
1
reply
914
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 5.2 years ago by
Thomas Girke
★ 1.7k • written 5.2 years ago by
Anthony Nash
▴ 20
1
vote
2
replies
1.4k
views
drawing chemical from smile 2D/3D
chemminer
updated 6.9 years ago by
Thomas Girke
★ 1.7k • written 6.9 years ago by
Stane
▴ 40
0
votes
1
reply
2.1k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 8.0 years ago by
Thomas Girke
★ 1.7k • written 8.0 years ago by
ረ
• 0
0
votes
0
replies
1.3k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
3.0 years ago
sukissqz
• 0
0
votes
1
reply
825
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
2.8 years ago
adelenelai
• 0
0
votes
0
replies
1.2k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
11.4 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
290
views
Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
8 months ago
Sean
• 0
0
votes
0
replies
1.1k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
11.2 years ago
Thomas Girke
★ 1.7k
0
votes
2
replies
1.4k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
7.2 years ago
elisa.micarelli
▴ 10
0
votes
0
replies
966
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
7.2 years ago
stephan.struckmann
• 0
0
votes
0
replies
838
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
6.6 years ago
jubilantsundar
• 0
3
votes
4
replies
1.3k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 3.3 years ago by
Thomas Girke
★ 1.7k • written 3.4 years ago by
teresadijor
• 0
15 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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Malcolm Cook
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priyanka.m
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Vincent J. Carey, Jr.
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