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ChiPpeakAnno
•
reset
0
votes
0
replies
1.1k
views
ChIPpeakAnno: using findOverlappingPeaks for non-overlapping peaks
GO
annotate
ChIPpeakAnno
GO
annotate
ChIPpeakAnno
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
968
views
ChIPpeak Anno RangedData question
GO
ChIPpeakAnno
GO
ChIPpeakAnno
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.5k
views
Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)
Annotation
annotate
ChIPpeakAnno
Annotation
annotate
ChIPpeakAnno
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
880
views
Gene Name annotation
Annotation
annotate
convert
ChIPpeakAnno
Annotation
annotate
convert
ChIPpeakAnno
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.1k
views
ChIPpeakAnno question
ChIPpeakAnno
ChIPpeakAnno
updated 14.9 years ago by
Ron Hart
▴ 20 • written 14.9 years ago by
Julie Zhu
★ 4.3k
0
votes
0
replies
907
views
Regarding to ChIPpeakAnno package
IRanges
ChIPpeakAnno
IRanges
ChIPpeakAnno
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
7
replies
2.4k
views
ChIPpeakAnno::getEnrichedGo crashes but I don't know why
annotate
ChIPpeakAnno
annotate
ChIPpeakAnno
updated 14.9 years ago by
Julie Zhu
★ 4.3k • written 14.9 years ago by
Eric Cabot
▴ 40
0
votes
0
replies
1.0k
views
Regarding to ChIPpeakAnno package
ChIPpeakAnno
ChIPpeakAnno
14.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
848
views
A question about outputting GO annotation
Annotation
GO
ChIPpeakAnno
Annotation
GO
ChIPpeakAnno
15.0 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.6k
views
totalTest number in ChipPeakAnno
ChIPpeakAnno
ChIPpeakAnno
updated 15.0 years ago by
Binbin Liu
▴ 30 • written 15.1 years ago by
Noah Dowell
▴ 410
0
votes
0
replies
960
views
ChIPpeakAnno
ChIPpeakAnno
ChIPpeakAnno
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.5k
views
strange ChIPpeakAnno and rtracklayer interaction.
GO
annotate
rtracklayer
ChIPpeakAnno
GO
annotate
rtracklayer
ChIPpeakAnno
updated 15.1 years ago by
Michael Lawrence
★ 11k • written 15.1 years ago by
oleg@stat.berkeley.edu
▴ 20
0
votes
0
replies
1.2k
views
ChIPpeakAnno bug?
GO
AnnotationData
ChIPpeakAnno
GO
AnnotationData
ChIPpeakAnno
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.3k
views
Error while ChIPpeakAnno installation
limma
biomaRt
IRanges
ChIPpeakAnno
limma
biomaRt
IRanges
ChIPpeakAnno
updated 15.1 years ago by
Julie Zhu
★ 4.3k • written 15.1 years ago by
Prashantha Hebbar
▴ 260
0
votes
0
replies
1.2k
views
ChIPpeakAnno -findOverlappingPeaks
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.2 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
1.7k
views
about ChIPpeakAnno
Annotation
ChIPpeakAnno
Annotation
ChIPpeakAnno
15.2 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.5k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.3 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.3k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.3 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
2.3k
views
Question on Hypergeometric P value generated from makeVennDiagram in ChIPpeakAnno
Transcription
GO
ChIPpeakAnno
Transcription
GO
ChIPpeakAnno
updated 15.4 years ago by
Julie Zhu
★ 4.3k • written 15.4 years ago by
Noah Dowell
▴ 410
0
votes
6
replies
2.1k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 15.5 years ago by
Julie Zhu
★ 4.3k • written 15.5 years ago by
Noah Dowell
▴ 410
0
votes
8
replies
2.2k
views
ChIPpeakAnno Strandedness and distance calculation
Annotation
Cancer
ChIPpeakAnno
Annotation
Cancer
ChIPpeakAnno
updated 15.6 years ago by
Dario Strbenac
★ 1.6k • written 15.6 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
969
views
ChIPpeakAnno BED2RangedData
ChIPpeakAnno
ChIPpeakAnno
updated 15.6 years ago by
Julie Zhu
★ 4.3k • written 15.6 years ago by
Abirami Subbu
▴ 10
0
votes
0
replies
1.1k
views
[Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data
Biostrings
ChIPpeakAnno
Biostrings
ChIPpeakAnno
15.7 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.2k
views
ChIPpeakAnno get sequences from ranged data
ChIPpeakAnno
ChIPpeakAnno
15.7 years ago
Julie Zhu
★ 4.3k
0
votes
7
replies
2.0k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation
GO
BSgenome
BSgenome
ChIPpeakAnno
Annotation
GO
BSgenome
BSgenome
ChIPpeakAnno
updated 15.7 years ago by
Ivan Gregoretti
▴ 310 • written 15.7 years ago by
Julie Zhu
★ 4.3k
0
votes
3
replies
1.4k
views
ChIPpeakAnno
Transcription
ChIPpeakAnno
Transcription
ChIPpeakAnno
15.8 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
947
views
[Bioc-devel] BSgenome error
GO
BSgenome
BSgenome
IRanges
ChIPpeakAnno
GO
BSgenome
BSgenome
IRanges
ChIPpeakAnno
16.0 years ago
Tony Chiang
▴ 570
0
votes
0
replies
1.4k
views
ChIPpeakAnno Biomart Archive annotation querying
Annotation
GO
AnnotationData
BSgenome
biomaRt
BSgenome
ChIPpeakAnno
Annotation
GO
biomaRt
16.0 years ago
Khademul Islam
▴ 30
0
votes
1
reply
1.8k
views
ChIPpeakAnno Biomart annotation
Annotation
GO
AnnotationData
BSgenome
biomaRt
BSgenome
ChIPpeakAnno
Annotation
GO
biomaRt
updated 16.0 years ago by
Julie Zhu
★ 4.3k • written 16.0 years ago by
Khademul Islam
▴ 30
179 results • Page
4 of 4
Recent ...
Replies
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Hervé Pagès
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jared.andrews07
▴ 30
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James W. MacDonald
68k
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shepherl
4.2k
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Gordon Smyth
53k
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