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ChiPpeakAnno
•
reset
0
votes
0
replies
1.1k
views
ChIPpeakAnno: using findOverlappingPeaks for non-overlapping peaks
GO
annotate
ChIPpeakAnno
GO
annotate
ChIPpeakAnno
15.0 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
987
views
ChIPpeak Anno RangedData question
GO
ChIPpeakAnno
GO
ChIPpeakAnno
15.0 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.6k
views
Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)
Annotation
annotate
ChIPpeakAnno
Annotation
annotate
ChIPpeakAnno
15.0 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
912
views
Gene Name annotation
Annotation
annotate
convert
ChIPpeakAnno
Annotation
annotate
convert
ChIPpeakAnno
15.0 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.1k
views
ChIPpeakAnno question
ChIPpeakAnno
ChIPpeakAnno
updated 15.0 years ago by
Ron Hart
▴ 20 • written 15.0 years ago by
Julie Zhu
★ 4.3k
0
votes
0
replies
928
views
Regarding to ChIPpeakAnno package
IRanges
ChIPpeakAnno
IRanges
ChIPpeakAnno
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
7
replies
2.5k
views
ChIPpeakAnno::getEnrichedGo crashes but I don't know why
annotate
ChIPpeakAnno
annotate
ChIPpeakAnno
updated 15.1 years ago by
Julie Zhu
★ 4.3k • written 15.1 years ago by
Eric Cabot
▴ 40
0
votes
0
replies
1.1k
views
Regarding to ChIPpeakAnno package
ChIPpeakAnno
ChIPpeakAnno
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
875
views
A question about outputting GO annotation
Annotation
GO
ChIPpeakAnno
Annotation
GO
ChIPpeakAnno
15.2 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.6k
views
totalTest number in ChipPeakAnno
ChIPpeakAnno
ChIPpeakAnno
updated 15.2 years ago by
Binbin Liu
▴ 30 • written 15.2 years ago by
Noah Dowell
▴ 410
0
votes
0
replies
983
views
ChIPpeakAnno
ChIPpeakAnno
ChIPpeakAnno
15.3 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.5k
views
strange ChIPpeakAnno and rtracklayer interaction.
GO
annotate
rtracklayer
ChIPpeakAnno
GO
annotate
rtracklayer
ChIPpeakAnno
updated 15.3 years ago by
Michael Lawrence
★ 11k • written 15.3 years ago by
oleg@stat.berkeley.edu
▴ 20
0
votes
0
replies
1.3k
views
ChIPpeakAnno bug?
GO
AnnotationData
ChIPpeakAnno
GO
AnnotationData
ChIPpeakAnno
15.3 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.3k
views
Error while ChIPpeakAnno installation
limma
biomaRt
IRanges
ChIPpeakAnno
limma
biomaRt
IRanges
ChIPpeakAnno
updated 15.3 years ago by
Julie Zhu
★ 4.3k • written 15.3 years ago by
Prashantha Hebbar
▴ 260
0
votes
0
replies
1.2k
views
ChIPpeakAnno -findOverlappingPeaks
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.4 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
1.8k
views
about ChIPpeakAnno
Annotation
ChIPpeakAnno
Annotation
ChIPpeakAnno
15.4 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.6k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.4 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.3k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq
chipseq
ChIPpeakAnno
ChIPSeq
chipseq
ChIPpeakAnno
15.5 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
2.3k
views
Question on Hypergeometric P value generated from makeVennDiagram in ChIPpeakAnno
Transcription
GO
ChIPpeakAnno
Transcription
GO
ChIPpeakAnno
updated 15.5 years ago by
Julie Zhu
★ 4.3k • written 15.5 years ago by
Noah Dowell
▴ 410
0
votes
6
replies
2.2k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 15.6 years ago by
Julie Zhu
★ 4.3k • written 15.6 years ago by
Noah Dowell
▴ 410
0
votes
8
replies
2.3k
views
ChIPpeakAnno Strandedness and distance calculation
Annotation
Cancer
ChIPpeakAnno
Annotation
Cancer
ChIPpeakAnno
updated 15.7 years ago by
Dario Strbenac
★ 1.6k • written 15.7 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
983
views
ChIPpeakAnno BED2RangedData
ChIPpeakAnno
ChIPpeakAnno
updated 15.8 years ago by
Julie Zhu
★ 4.3k • written 15.8 years ago by
Abirami Subbu
▴ 10
0
votes
0
replies
1.1k
views
[Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data
Biostrings
ChIPpeakAnno
Biostrings
ChIPpeakAnno
15.9 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.2k
views
ChIPpeakAnno get sequences from ranged data
ChIPpeakAnno
ChIPpeakAnno
15.9 years ago
Julie Zhu
★ 4.3k
0
votes
7
replies
2.0k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation
GO
BSgenome
BSgenome
ChIPpeakAnno
Annotation
GO
BSgenome
BSgenome
ChIPpeakAnno
updated 15.9 years ago by
Ivan Gregoretti
▴ 310 • written 15.9 years ago by
Julie Zhu
★ 4.3k
0
votes
3
replies
1.4k
views
ChIPpeakAnno
Transcription
ChIPpeakAnno
Transcription
ChIPpeakAnno
16.0 years ago • updated 15.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
971
views
[Bioc-devel] BSgenome error
GO
BSgenome
BSgenome
IRanges
ChIPpeakAnno
GO
BSgenome
BSgenome
IRanges
ChIPpeakAnno
16.1 years ago
Tony Chiang
▴ 570
0
votes
0
replies
1.4k
views
ChIPpeakAnno Biomart Archive annotation querying
Annotation
GO
AnnotationData
BSgenome
biomaRt
BSgenome
ChIPpeakAnno
Annotation
GO
biomaRt
16.2 years ago
Khademul Islam
▴ 30
0
votes
1
reply
1.9k
views
ChIPpeakAnno Biomart annotation
Annotation
GO
AnnotationData
BSgenome
biomaRt
BSgenome
ChIPpeakAnno
Annotation
GO
biomaRt
updated 16.2 years ago by
Julie Zhu
★ 4.3k • written 16.2 years ago by
Khademul Islam
▴ 30
179 results • Page
4 of 4
Recent ...
Replies
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
TikTs3a3ssalpc
• 0
In the Gviz package, individual exon styles like line width or font color are usually global, much like how the Massar Service centralizes …
Comment: limpa analysis advice
by
Gordon Smyth
53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency)
by
shepherl
4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Votes
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
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