Showing : ChiPpeakAnno • reset
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ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
12.9 years ago • updated 12.8 years ago Julie Zhu ★ 4.3k
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2
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1.7k
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ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 12.9 years ago by ▴ 10 • written 12.9 years ago by ★ 4.3k
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
12.9 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno ChIPpeakAnno
13.0 years ago Julie Zhu ★ 4.3k
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5
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1.5k
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ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno ChIPpeakAnno
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ▴ 40
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3
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Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
13.1 years ago Julie Zhu ★ 4.3k
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7
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2.1k
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Problem loading BED file with BED2RangedData
GO ChIPpeakAnno GO ChIPpeakAnno
updated 13.2 years ago by ★ 1.3k • written 13.2 years ago by ▴ 280
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ChIPpeakAnno
Annotation Category ChIPpeakAnno Annotation Category ChIPpeakAnno
13.2 years ago Julie Zhu ★ 4.3k
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3
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1.7k
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ChIPpeakAnno problem w getAllPeakSequence()
GO annotate ChIPpeakAnno GO annotate ChIPpeakAnno
updated 13.3 years ago by ★ 1.3k • written 13.3 years ago by ▴ 50
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1.5k
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ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics GO ChIPpeakAnno Genetics GO ChIPpeakAnno
13.3 years ago Julie Zhu ★ 4.3k
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3
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1.5k
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ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics ChIPpeakAnno Genetics ChIPpeakAnno
updated 13.3 years ago by ★ 1.3k • written 13.3 years ago by ▴ 510
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question regarding ChIPPeakAnno use
Annotation annotate GLAD ChIPpeakAnno Annotation annotate GLAD ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
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3
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1.6k
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RE ChIPPEAKANNO
miRNA Genetics ChIPpeakAnno miRNA Genetics ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
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4
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1.6k
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ChIPpeakAnno
convert ChIPpeakAnno convert ChIPpeakAnno
13.4 years ago Julie Zhu ★ 4.3k
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1
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1.5k
views
Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
13.5 years ago Julie Zhu ★ 4.3k
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1.2k
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ChIPpeakAnno to find peaks nearest to miRNA
miRNA Annotation GO BSgenome biomaRt BSgenome ChIPpeakAnno miRNA Annotation GO BSgenome
13.5 years ago Julie Zhu ★ 4.3k
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4
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1.7k
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more question about makeVennDiagram
GO ChIPpeakAnno GO ChIPpeakAnno
13.5 years ago Julie Zhu ★ 4.3k
0
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3
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2.3k
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ChIPpeakAnno to find peaks nearest to miRNA
miRNA GO BSgenome BSgenome ChIPpeakAnno miRNA GO BSgenome BSgenome ChIPpeakAnno
updated 13.5 years ago by ★ 4.3k • written 13.5 years ago by ▴ 350
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ChIPpeakAnno - Annotation of miRNA
miRNA GO BSgenome BSgenome ChIPpeakAnno miRNA GO BSgenome BSgenome ChIPpeakAnno
13.5 years ago Paolo Kunderfranco ▴ 350
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5
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2.0k
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[ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9
ChIPpeakAnno ChIPpeakAnno
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 90
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1
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1.0k
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ChIPPeakAnno query (overlaps)
ChIPpeakAnno ChIPpeakAnno
13.7 years ago Julie Zhu ★ 4.3k
0
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2
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1.4k
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ChIPpeakAnno: Inquiry for Worm Analysis
Annotation GO annotate convert ChIPpeakAnno Annotation GO annotate convert ChIPpeakAnno
13.9 years ago • updated 13.8 years ago Julie Zhu ★ 4.3k
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2
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1.1k
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ChIPpeakAnno - Request of information
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
updated 13.8 years ago by ★ 1.3k • written 13.8 years ago by ★ 4.3k
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2
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1.4k
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ChIPpeakAnno findVennCounts
ChIPpeakAnno ChIPpeakAnno
updated 13.8 years ago by ▴ 10 • written 13.9 years ago by ★ 4.3k
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4
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1.7k
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question regarding ChIPPeakAnno use
ChIPpeakAnno ChIPpeakAnno
updated 13.9 years ago by ▴ 20 • written 13.9 years ago by ★ 4.3k
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1
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1.3k
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ChIPpeakAnno on pathway enrichment
Pathways GO ChIPpeakAnno Pathways GO ChIPpeakAnno
updated 13.9 years ago by ▴ 240 • written 13.9 years ago by ★ 4.3k
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660
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ChipPeakAnno question about file conversion
convert ChIPpeakAnno convert ChIPpeakAnno
13.9 years ago Julie Zhu ★ 4.3k
0
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4
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2.7k
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ChIPpeakAnno as.data.frame error
GO AnnotationData annotate convert ChIPpeakAnno GO AnnotationData annotate convert
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 910
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2
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2.0k
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ChIPpeakAnno
GO BSgenome annotate BSgenome ChIPpeakAnno GO BSgenome annotate BSgenome ChIPpeakAnno
updated 14.0 years ago by ▴ 10 • written 14.0 years ago by ▴ 10
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3
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1.1k
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ChiPpeakAnno: findOverlappingPeaks: running time
GO ChIPpeakAnno GO ChIPpeakAnno
updated 14.0 years ago by ★ 4.3k • written 14.0 years ago by ★ 13k
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1
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1.1k
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ChIPpeakAnno, makeVennDiagram
Transcription ChIPpeakAnno Transcription ChIPpeakAnno
14.2 years ago Julie Zhu ★ 4.3k
0
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0
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968
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ChIPpeakAnno - for genes with multiple isoforms
Transcription Annotation annotate ChIPpeakAnno Transcription Annotation annotate
14.3 years ago Julie Zhu ★ 4.3k
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12
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3.2k
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more stupid *Ranges questions...
Transcription ChIPpeakAnno GenomicRanges Transcription ChIPpeakAnno GenomicRanges
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ★ 4.2k
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1.1k
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[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch problems in R2.13/ChIPpeakAnno_1.8.0 and R2.13/ChIPpeakAnno_2.0.2
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
14.4 years ago Julie Zhu ★ 4.3k
0
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2
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2.0k
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ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
14.4 years ago Julie Zhu ★ 4.3k
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3
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1.6k
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chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO
Annotation convert biomaRt bridge ChIPpeakAnno Annotation convert biomaRt bridge
updated 14.5 years ago by ▴ 810 • written 14.5 years ago by ★ 4.3k
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1.3k
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Regarding ChIPpeakAnno::getEnrichedGO function
GO ChIPpeakAnno GO ChIPpeakAnno
updated 14.6 years ago by ▴ 20 • written 14.6 years ago by ★ 4.3k
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1.2k
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ChIPpeakAnno package - filter annotatedPeak for GO enrichment analysis
ChIPSeq Annotation GO biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation GO biomaRt chipseq
14.6 years ago Julie Zhu ★ 4.3k
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2
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1.5k
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Hypergeometric test in ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 14.6 years ago by ▴ 20 • written 14.6 years ago by ★ 4.3k
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1.1k
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Information needed for ChIPpeakAnno package
annotate ChIPpeakAnno annotate ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
0
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0
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955
views
choice of biomaRt feature from annotatePeakInBatch
ChIPSeq Annotation biomaRt chipseq ChIPpeakAnno ChIPSeq Annotation biomaRt chipseq
14.6 years ago Julie Zhu ★ 4.3k
0
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0
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947
views
ChIPpeakAnno
annotate IRanges ChIPpeakAnno annotate IRanges ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
0
votes
1
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865
views
IRanges question!
annotate IRanges ChIPpeakAnno annotate IRanges ChIPpeakAnno
updated 14.6 years ago by ★ 11k • written 14.6 years ago by ▴ 290
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0
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1.0k
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4-way venn diagram with ChIPpeakAnno
ChIPpeakAnno ChIPpeakAnno
14.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.1k
views
Create an non-mainstream organism-specific database for ChIP-chip analysis
Organism ChIPpeakAnno Organism ChIPpeakAnno
updated 14.8 years ago by ★ 7.2k • written 14.8 years ago by ▴ 40
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1.5k
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Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
14.8 years ago Julie Zhu ★ 4.3k
0
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1
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1.5k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 14.9 years ago by ★ 8.2k • written 14.9 years ago by ▴ 120
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1
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1.4k
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[ENQUIRY] chIPpeakAnno annotatePeakInBatch
GO AnnotationData ChIPpeakAnno GO AnnotationData ChIPpeakAnno
14.9 years ago Julie Zhu ★ 4.3k
0
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3
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1.4k
views
Help on ChIPpeakAnno
probe ChIPpeakAnno probe ChIPpeakAnno
14.9 years ago Prashantha Hebbar ▴ 260
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0
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1.4k
views
Call for help about your Chippeakanno R package
Annotation Cancer AnnotationData ChIPpeakAnno Annotation Cancer AnnotationData ChIPpeakAnno
14.9 years ago Julie Zhu ★ 4.3k
179 results • Page 3 of 4
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by TikTs3a3ssalpc • 0
In the Gviz package, individual exon styles like line width or font color are usually global, much like how the Massar Service centralizes …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
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C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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Answer: Array weights in dpcDE
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