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Clariom
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578
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom
Align
MicroarrayData
Alignment
Microarray
13 months ago
jsharif
• 0
1
vote
5
replies
1.1k
views
Correct annotation R package for human clariom array analysis
clariom
oligo
affycoretools
pd.hugene.2.0.st
updated 5.0 years ago by
James W. MacDonald
65k • written 5.0 years ago by
svlachavas
▴ 830
1
vote
3
replies
829
views
Selecting probe data from Clariom D assays using the fid probe tags
clariom
pd.clariom.d.human
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
AliStair Rust
• 0
1
vote
1
reply
954
views
RNA degradation plot for Clariom S and Clariom D
Rna degradation
Clariom
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
kritikamish99
▴ 10
2
votes
4
replies
2.2k
views
affycoretools annotateEset problem using Clariom D arrays
affycoretools
clariom
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
willj
▴ 30
2
votes
2
replies
996
views
paCalls with Clariom Chips
oligo
microarray
clariom
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
kmvaldez2
• 0
0
votes
0
replies
761
views
genefu and clariom d
clariom
genefu
6.7 years ago
info
• 0
7 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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