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CpG
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reset
3
votes
2
replies
1.3k
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What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE
CpG
minfi
CpGinterrogation
22 months ago
kyj2226
• 0
0
votes
0
replies
590
views
CpG coverage with MEDIPS
MEDIPS
CpG
2.1 years ago
greta
• 0
0
votes
4
replies
1.8k
views
CpG density in MEDIPS
CpG
MEDIPS
7.0 years ago
saripalligautam86
▴ 10
0
votes
3
replies
2.0k
views
CpG site not annotated with annotatr
annotatr
cpg
updated 7.0 years ago by
rcavalca
▴ 140 • written 7.0 years ago by
soli5
• 0
0
votes
1
reply
1.8k
views
CpG Sites // CG dinucleotides
CpG
CpG sites
CpG dinucleotides
updated 8.1 years ago by
Hervé Pagès
16k • written 8.2 years ago by
ibetfer3
• 0
1
vote
1
reply
7.7k
views
How to get the all CpG sites genome postion for hg19
CpG
updated 8.5 years ago by
James W. MacDonald
68k • written 8.5 years ago by
ericotorrieri
• 0
0
votes
3
replies
2.7k
views
Compute the CpG content for all chromosome like the percentage of G+C
CpG
10.7 years ago • updated 10.6 years ago
Tiphaine Martin
▴ 40
7 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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