Showing : CpG • reset
3
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What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
2.0 years ago kyj2226 • 0
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0
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639
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CpG coverage with MEDIPS
MEDIPS CpG
2.3 years ago greta • 0
0
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4
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1.9k
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CpG density in MEDIPS
CpG MEDIPS
7.2 years ago saripalligautam86 ▴ 10
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3
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2.1k
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CpG site not annotated with annotatr
annotatr cpg
updated 7.2 years ago by ▴ 140 • written 7.2 years ago by • 0
0
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1
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1.9k
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CpG Sites // CG dinucleotides
CpG CpG sites CpG dinucleotides
updated 8.3 years ago by 16k • written 8.3 years ago by • 0
1
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1
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7.8k
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How to get the all CpG sites genome postion for hg19
CpG
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
0
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3
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Compute the CpG content for all chromosome like the percentage of G+C
CpG
10.8 years ago Tiphaine Martin ▴ 40
7 results • Page 1 of 1
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Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit by Mark • 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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