Showing : CpG • reset
3
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What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
2.1 years ago kyj2226 • 0
0
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0
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649
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CpG coverage with MEDIPS
MEDIPS CpG
2.3 years ago greta • 0
0
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4
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1.9k
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CpG density in MEDIPS
CpG MEDIPS
7.3 years ago saripalligautam86 ▴ 10
0
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3
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2.1k
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CpG site not annotated with annotatr
annotatr cpg
updated 7.3 years ago by ▴ 140 • written 7.3 years ago by • 0
0
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1
reply
1.9k
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CpG Sites // CG dinucleotides
CpG CpG sites CpG dinucleotides
updated 8.4 years ago by 16k • written 8.4 years ago by • 0
1
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1
reply
8.0k
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How to get the all CpG sites genome postion for hg19
CpG
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
0
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3
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2.9k
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Compute the CpG content for all chromosome like the percentage of G+C
CpG
10.9 years ago • updated 10.8 years ago Tiphaine Martin ▴ 40
7 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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