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Cydar
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1.1k
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Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 5.8 years ago by
Aaron Lun
★ 29k • written 5.8 years ago by
thkapell
▴ 10
1
vote
6
replies
2.5k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 6.3 years ago by
Aaron Lun
★ 29k • written 6.3 years ago by
ghogg
• 0
0
votes
4
replies
1.7k
views
Using output from normalizeBatch() outside of cydar package
cydar
mass cytometry
updated 6.6 years ago by
Aaron Lun
★ 29k • written 6.6 years ago by
kenneth.baker
• 0
2
votes
8
replies
2.3k
views
Cydar normalizeBatch specifying batches
Cydar
normalization
normalizeBatch
updated 6.8 years ago by
Aaron Lun
★ 29k • written 6.8 years ago by
Florent
▴ 10
2
votes
4
replies
1.5k
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 6.9 years ago by
Aaron Lun
★ 29k • written 6.9 years ago by
mikhael.manurung
▴ 280
1
vote
2
replies
1.3k
views
cydar: negative values for cell assignment indices
cydar
8.5 years ago
Lukas Weber
• 0
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Martin Morgan
25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
ATpoint
★ 5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening in a clean install
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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