Bioconductor Cydar

Showing : Cydar • reset

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770

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cydar

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by thkapell ▴ 10

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2.0k

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Cydar CyTOF normalization

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by ghogg • 0

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1.3k

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cydar mass cytometry

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by kenneth.baker • 0

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1.8k

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Cydar normalization normalizeBatch

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Florent ▴ 10

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1.1k

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cydar CyTOF

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by mikhael.manurung ▴ 280

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968

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cydar

7.4 years ago Lukas Weber • 0

6 results • Page 1 of 1

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you Gordon! Apologies if this is a too basic question-I'm a biologist and want to ensure I understand correctly. Here is my metadata …

Comment: nightmare to make custom txdb for genomes from ToxoDB by rohitsatyam102 ▴ 20

I offer my apologies if the title was misleading. I will change it at once. I wrote txdb because the error emnated from `seqlevelsStyle(txd…

Comment: nightmare to make custom txdb for genomes from ToxoDB by rohitsatyam102 ▴ 20

Hi Herve As I mentioned, for parasites we rely on VEuPathDB databases (such as ToxoDB here: https://toxodb.org/toxo/app/downloads) which p…

Comment: nightmare to make custom txdb for genomes from ToxoDB by Hervé Pagès 16k

`keepStandardChromosomes()` is not smart enough to know what to keep for this assembly. Note that what `keepStandardChromosomes()` means by…

Comment: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Thanks Hervé! Very helpful. However, I believe that `keepStandardChromosomes` gets called by `gDNAx`, and it appears not to work correctly.…

Votes

Answer: nightmare to make custom txdb for genomes from ToxoDB

Comment: nightmare to make custom txdb for genomes from ToxoDB

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

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