Bioconductor Cydar

Showing : Cydar • reset

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1.1k

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cydar

updated 5.6 years ago by Aaron Lun ★ 29k • written 5.7 years ago by thkapell ▴ 10

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2.5k

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Cydar CyTOF normalization

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by ghogg • 0

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1.6k

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cydar mass cytometry

updated 6.4 years ago by Aaron Lun ★ 29k • written 6.4 years ago by kenneth.baker • 0

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2.1k

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Cydar normalization normalizeBatch

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Florent ▴ 10

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1.5k

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cydar CyTOF

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by mikhael.manurung ▴ 280

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1.3k

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cydar

8.4 years ago Lukas Weber • 0

6 results • Page 1 of 1

Recent ...

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Commentator to sina.nassiri ▴ 130