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DBA
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1.2k
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DBA Error in DiffBind - How to format sampleSheet
DBA
R
DifferentialPeakCalling
4.1 years ago
opheevallee
• 0
0
votes
1
reply
1.9k
views
DiffBind dba error
DiffBind
dba
R
error
updated 6.4 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
annika-helverson
• 0
3
votes
3
replies
5.5k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
7.8 years ago
maria.kondili
▴ 10
0
votes
0
replies
1.5k
views
How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer
deseq2
edger
CONDITIONS
DBA
8.0 years ago
arcucamila
• 0
3
votes
7
replies
2.8k
views
dba.count with pre-defined regions
dba.count
dba
chipseq
diffbind
updated 8.1 years ago by
Rory Stark
★ 5.2k • written 8.1 years ago by
sylvia
▴ 10
0
votes
1
reply
1.7k
views
can't find function "dba" in DiffBind
DiffBind
dba
package installation
9.2 years ago
rebecca.spokony
• 0
1
vote
16
replies
5.0k
views
Error: could not find function "dba"
software error
diffbind
dba
9.2 years ago
mmarins
• 0
7 results • Page
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Comment: Bile acid analysis with limpa
by
ATpoint
★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help
by
Jeremy
• 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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