Bioconductor DBA

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DBA R DifferentialPeakCalling

3.0 years ago opheevallee • 0

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1.6k

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DiffBind dba R error

updated 5.3 years ago by Rory Stark ★ 5.2k • written 5.5 years ago by annika-helverson • 0

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diffbind chipseq peaks dba is.na

6.6 years ago maria.kondili ▴ 10

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cancer deseq2 edger CONDITIONS DBA

6.9 years ago arcucamila • 0

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2.2k

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dba.count dba chipseq diffbind

updated 7.0 years ago by Rory Stark ★ 5.2k • written 7.0 years ago by sylvia ▴ 10

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1.4k

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DiffBind dba package installation

8.1 years ago rebecca.spokony • 0

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4.2k

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software error diffbind dba

8.1 years ago mmarins • 0

7 results • Page 1 of 1

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Comment: DESeq2 dispersion estimates fitting drastically different based on explanatory v by Sam • 0

Here is the explanatory variables![enter image description here][1] uses if that helps address the problem as well [1]: /media/images/…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

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Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to Hans-Ulrich Klein ▴ 330