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DESEQ2
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6
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220
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 3 days ago by
swbarnes2
★ 1.3k • written 4 days ago by
arfranco
▴ 130
1
vote
4
replies
481
views
DEseq2 coefficient
DESeq2
coefficient
10 weeks ago • updated 5 days ago
JKim
• 0
0
votes
3
replies
256
views
log2FoldChange value is way too different when compared with counts(dds)
DESeq2
updated 5 days ago by
Michael Love
42k • written 6 days ago by
HAK
• 0
0
votes
3
replies
146
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 5 days ago by
ATpoint
★ 4.1k • written 5 days ago by
james.zhang20
• 0
2
votes
3
replies
181
views
Too many significant genes when integrating gtex and tcga
RNA-seq
DESeq2
updated 2 days ago by
ATpoint
★ 4.1k • written 3 days ago by
Reza
• 0
0
votes
2
replies
145
views
Deseq2 and Normalization of RNA sequencing data
DESeq2
5 days ago • updated 4 days ago
kcarey
• 0
0
votes
2
replies
112
views
DESeq2 v1.35.0
DESeq2
updated 5 days ago by
Michael Love
42k • written 5 days ago by
Espresso
• 0
0
votes
2
replies
128
views
Timecourse RNASeq analysis
DESeq2
ImpulseDE2
timecour
timecoursedata
moanin
7 days ago • updated 4 days ago
Aurora
• 0
0
votes
1
reply
152
views
Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 5 days ago by
ATpoint
★ 4.1k • written 5 days ago by
angelathuynh5
• 0
1
vote
1
reply
105
views
Handling multiple differential expression comparisons
DESeq2
updated 2 days ago by
Michael Love
42k • written 3 days ago by
Zainab
▴ 10
10 results • Page
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark?
by
Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip
by
James W. MacDonald
65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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