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DESEq
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1
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322
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evaluate the variable importance on genes
DESeq2
deseq
10 weeks ago
Meme
• 0
0
votes
2
replies
342
views
Running DESeq on normalized data
deseq
DESeq2
updated 4 months ago by
ATpoint
★ 4.1k • written 4 months ago by
Hugo
• 0
2
votes
2
replies
526
views
Predicting missing values splines DESeq2
deseq
DESeq2
5 months ago
georgii.vdovin
• 0
0
votes
1
reply
385
views
Controling for Covariates With a Continuous Predictor Variable
Deseq
DESeq2
updated 6 months ago by
Michael Love
42k • written 6 months ago by
georgii.vdovin
• 0
0
votes
1
reply
658
views
Can I transform already normalized rna-seq data with Z-score?
Z-score
RNASeqData
Deseq
DESeq2
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
khaserdene99
• 0
0
votes
3
replies
909
views
Difference between DESeqDataSetFromMatrix() function and DESeq() function
DESeq
DESeq2
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
Abir.khazaal
▴ 10
6
votes
11
replies
26k
views
With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq
deseq2
updated 9 months ago by
Erika
• 0 • written 9.3 years ago by
c.lieftink@nki.nl
▴ 40
0
votes
4
replies
664
views
lfc direction of effect flipped for ashr, apeGLM, but accurate to biological data for non-shrunken
DESeq2
apeglm
DESeq
ApeGLM
Ashr
updated 9 months ago by
Michael Love
42k • written 9 months ago by
Ndimensional
▴ 20
8 results • Page
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Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
yes my mistake I mixed the equation up while copying into the reply box. Should have been: ```{r} 2 * (1 - pt(abs(tstat), df = df.residual…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
EDIT: removed
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
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