Showing : DESe • reset
4
votes
4
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1.1k
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Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2 Dese DifferentialRegulation differe
updated 8 weeks ago by • 0 • written 13 months ago by ▴ 10
3
votes
3
replies
935
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Merging two plated in R
dese DESeq2
updated 24 months ago by 65k • written 24 months ago by ▴ 10
2
votes
17
replies
1.8k
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lfcshrink error DESeq2
DESeq2 lfcshrink DESe
updated 12 months ago by 42k • written 12 months ago by • 0
2
votes
3
replies
1.0k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2 DESe
updated 3.2 years ago by 42k • written 3.2 years ago by • 0
1
vote
3
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1.4k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2 dese
2.3 years ago aedavids ▴ 20
0
votes
5
replies
830
views
DESeq2 analysis
DESe DESeq2
9 months ago Adèle • 0
0
votes
2
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867
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DESeq2 ratio of ratios and p-value
DESeq2 dese
2.5 years ago wilfried.guiblet • 0
0
votes
2
replies
283
views
Cross-species analysis using DESeq2 - size factor computation
dese DESeq2
3 months ago pl23 • 0
0
votes
2
replies
424
views
Linear Model Fitting and Colinearity
dese DESeq2
5 months ago Hugo • 0
0
votes
2
replies
778
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 3.5 years ago by 42k • written 3.5 years ago by • 0
0
votes
2
replies
272
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2 dese
updated 3 months ago by ★ 4.1k • written 3 months ago by • 0
0
votes
2
replies
633
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where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe DESeq2
updated 2.6 years ago by 42k • written 2.6 years ago by • 0
0
votes
1
reply
180
views
collapseReplicates dimension error
DESeq2 Dese
updated 7 weeks ago by 42k • written 7 weeks ago by • 0
0
votes
5
replies
3.4k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE DESeq2
updated 2.0 years ago by ▴ 780 • written 2.0 years ago by • 0
0
votes
2
replies
994
views
Handling NA's in Deseq2
Dese DESeq2
11 months ago Asger Mølgaard • 0
15 results • Page 1 of 1
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Marcel Ramos 690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler by Yael • 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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