Bioconductor DESeq

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deseq deseq2

updated 9 months ago by Erika • 0 • written 9.3 years ago by c.lieftink@nki.nl ▴ 40

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542

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deseq DESeq2

6 months ago georgii.vdovin • 0

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347

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DESeq2 deseq

12 weeks ago Meme • 0

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352

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deseq DESeq2

updated 5 months ago by ATpoint ★ 4.1k • written 5 months ago by Hugo • 0

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683

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Z-score RNASeqData Deseq DESeq2

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by khaserdene99 • 0

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982

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DESeq DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Abir.khazaal ▴ 10

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674

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 10 months ago by Michael Love 42k • written 10 months ago by Ndimensional ▴ 20

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399

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Deseq DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by georgii.vdovin • 0

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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

thank you!

Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

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biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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