Bioconductor DESeq

Showing : DESeq • reset

vote

replies

347

views

DESeq2 deseq

12 weeks ago Meme • 0

votes

replies

350

views

deseq DESeq2

updated 5 months ago by ATpoint ★ 4.1k • written 5 months ago by Hugo • 0

votes

replies

541

views

deseq DESeq2

6 months ago georgii.vdovin • 0

votes

399

views

Deseq DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by georgii.vdovin • 0

votes

683

views

Z-score RNASeqData Deseq DESeq2

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by khaserdene99 • 0

votes

replies

981

views

DESeq DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Abir.khazaal ▴ 10

votes

replies

26k

views

deseq deseq2

updated 9 months ago by Erika • 0 • written 9.3 years ago by c.lieftink@nki.nl ▴ 40

votes

replies

673

views

DESeq2 apeglm DESeq ApeGLM Ashr

updated 10 months ago by Michael Love 42k • written 10 months ago by Ndimensional ▴ 20

8 results • Page 1 of 1

Recent ...

Replies

Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Awards • All