Bioconductor DESeq

Showing : DESeq • reset

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deseq deseq2

updated 10 months ago by Erika • 0 • written 9.3 years ago by c.lieftink@nki.nl ▴ 40

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DESeq DESeq2

updated 9 months ago by ATpoint ★ 4.2k • written 10 months ago by Abir.khazaal ▴ 10

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Z-score RNASeqData Deseq DESeq2

updated 8 months ago by James W. MacDonald 66k • written 8 months ago by khaserdene99 • 0

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 10 months ago by Michael Love 42k • written 10 months ago by Ndimensional ▴ 20

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553

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deseq DESeq2

6 months ago georgii.vdovin • 0

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Deseq DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by georgii.vdovin • 0

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deseq DESeq2

updated 5 months ago by ATpoint ★ 4.2k • written 5 months ago by Hugo • 0

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DESeq2 deseq

3 months ago Meme • 0

8 results • Page 1 of 1

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Answer: Counter-directional LFC shrinkage by swbarnes2 ★ 1.4k

The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …

Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k

Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…

Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k

I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…

Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k

Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.

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A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

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Popular Question to Dario Strbenac ★ 1.5k