Showing : DESeq • reset
0
votes
0
replies
790
views
Fwd: DESeq plotting graphs.
Cancer DESeq Cancer DESeq
13.1 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
1.4k
views
RNAseq object
RNASeq DESeq easyRNASeq RNASeq DESeq easyRNASeq
updated 13.1 years ago by ★ 4.2k • written 13.1 years ago by ★ 13k
0
votes
1
reply
1.8k
views
Differential expression analysis of CAGE data
Transcription Annotation convert edgeR DESeq Transcription Annotation convert edgeR DESeq
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 30
0
votes
1
reply
1.5k
views
DESeq cuont table normalization
Normalization DESeq Normalization DESeq
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 260
0
votes
2
replies
1.8k
views
DESeq - Estimating Dispersion with Technical Replicates
GLAD DESeq GLAD DESeq
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 20
0
votes
3
replies
1.2k
views
DESeq error
DESeq DESeq
updated 13.2 years ago by ★ 3.8k • written 13.2 years ago by ▴ 50
0
votes
3
replies
2.8k
views
DESeq - working with more than 2 conditions
DESeq DESeq
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 140
0
votes
4
replies
3.8k
views
Estimating Size Factors in DESeq Package
DESeq DESeq
updated 13.2 years ago by ★ 3.8k • written 13.2 years ago by ▴ 20
0
votes
2
replies
1.9k
views
DESeq Fold-Change calculation
DESeq DESeq
updated 13.2 years ago by ★ 3.8k • written 13.2 years ago by ★ 1.3k
0
votes
1
reply
4.6k
views
RNA-seq analysis and two-way ANOVAs
edgeR baySeq DEGseq DESeq DEXSeq edgeR baySeq DEGseq DESeq DEXSeq
updated 13.2 years ago by 53k • written 13.3 years ago by ▴ 160
0
votes
0
replies
1.0k
views
how to set parameter of DESeq function estimateDispersions
DESeq DESeq
13.3 years ago wang peter ★ 2.0k
0
votes
2
replies
1.5k
views
deseq within and between group variation
DESeq DESeq
updated 13.3 years ago by ★ 3.8k • written 13.3 years ago by ▴ 60
0
votes
4
replies
1.3k
views
DESeq normalization
Normalization DESeq Normalization DESeq
13.3 years ago sudeep s ▴ 60
0
votes
5
replies
3.0k
views
EasyRNASeq issue (missing bai files)
GO PROcess DESeq easyRNASeq GO PROcess DESeq easyRNASeq
updated 13.3 years ago by ▴ 10 • written 13.4 years ago by ★ 1.2k
0
votes
0
replies
1.3k
views
how to design model in DESeq
DESeq DESeq
13.4 years ago wang peter ★ 2.0k
0
votes
0
replies
797
views
FW: Reproducibility in DESeq
convert DESeq convert DESeq
13.4 years ago Fatemehsadat Seyednasrollah ▴ 260
0
votes
1
reply
1.3k
views
DESeq installation problems
DESeq BiocInstaller DESeq BiocInstaller
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by ▴ 10
3
votes
2
replies
13k
views
how to get normalized counts from edgeR
DESeq DESeq
updated 13.4 years ago by ▴ 880 • written 13.4 years ago by ★ 2.0k
0
votes
2
replies
1.4k
views
easyRNAseq question
Category DESeq easyRNASeq Category DESeq easyRNASeq
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 190
0
votes
0
replies
774
views
down-expression and high-expression in single cell + amplification
DESeq DESeq
13.4 years ago Dror Hibsh ▴ 40
0
votes
1
reply
900
views
Very Different group sizes in DE of two conditions
miRNA Cancer edgeR DESeq miRNA Cancer edgeR DESeq
updated 13.4 years ago by 53k • written 13.4 years ago by ★ 13k
0
votes
1
reply
1.7k
views
DESeq analysis
edgeR DESeq edgeR DESeq
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 260
0
votes
0
replies
2.0k
views
Differential gene expression: EdgeR / DESeq and identifying noise/outliers
Sequencing edgeR DESeq Sequencing edgeR DESeq
13.4 years ago Gordon Smyth 53k
0
votes
0
replies
1.1k
views
FW: DESeq analysis
edgeR DESeq edgeR DESeq
13.4 years ago Fatemehsadat Seyednasrollah ▴ 260
0
votes
0
replies
2.4k
views
Differential gene expression: EdgeR / DESeq and identifying noise/outliers
Sequencing edgeR DESeq Sequencing edgeR DESeq
13.4 years ago Michael Salbaum ▴ 80
0
votes
1
reply
1.4k
views
pvalue and padj in DESeq
DESeq DESeq
updated 13.4 years ago by ★ 3.8k • written 13.4 years ago by ★ 13k
0
votes
1
reply
1.9k
views
DESeq analysis
DESeq DESeq
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ★ 13k
0
votes
1
reply
1.1k
views
interactions between variables in DEXSeq
DESeq DESeq
updated 13.4 years ago by ★ 1.9k • written 13.4 years ago by ▴ 160
0
votes
1
reply
2.3k
views
estimateDispersions in DESeq
Genetics graph DESeq Genetics graph DESeq
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 10
0
votes
1
reply
1.3k
views
DESeq and contrasts
DESeq DESeq
updated 13.4 years ago by 53k • written 13.4 years ago by ▴ 20
0
votes
1
reply
986
views
RnaSeqTutorial Package
Annotation BSgenome BSgenome DESeq DEXSeq Annotation BSgenome BSgenome DESeq DEXSeq
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ★ 13k
0
votes
5
replies
1.5k
views
down-expression and high-expression in single cell + amplification
DESeq DESeq
updated 13.4 years ago by ★ 4.2k • written 13.4 years ago by ★ 13k
0
votes
0
replies
1.4k
views
paired analysis in RNA Seq data using DESeq
RNASeq edgeR DESeq RNASeq edgeR DESeq
13.4 years ago Natasha ▴ 440
0
votes
1
reply
3.8k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization graph limma convert edgeR DESeq Rsubread Normalization graph limma convert
updated 2.9 years ago by 53k • written 13.5 years ago by ★ 6.5k
0
votes
3
replies
2.4k
views
DESeq estimateDispersions() problem
DESeq DESeq
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ★ 1.2k
0
votes
0
replies
1.2k
views
DESeq estimateDispersions() problem
DESeq DESeq
13.5 years ago Karl Lundén ▴ 20
0
votes
0
replies
835
views
DESeq error thrown during estimateDispersions w/ coxReid method
DESeq DEXSeq DESeq DEXSeq
13.5 years ago Simon Anders ★ 3.8k
0
votes
2
replies
1.2k
views
DESeq error with glm.fit during estimateDispersions
DESeq DESeq
updated 13.5 years ago by ★ 3.8k • written 13.5 years ago by ▴ 210
0
votes
1
reply
2.0k
views
How to use DESeq output to convert raw counts to normalized data
convert DESeq convert DESeq
updated 13.5 years ago by ★ 3.8k • written 13.5 years ago by ▴ 30
0
votes
9
replies
2.1k
views
How to use DESeq to normalize and estimate variance in a RNAseq timecourse analysis
Normalization DESeq Normalization DESeq
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 50
0
votes
0
replies
1.2k
views
DESeq Package Questions
Network edgeR DESeq Network edgeR DESeq
13.5 years ago Xin Davis ▴ 30
0
votes
2
replies
2.4k
views
DESeq
DESeq DESeq
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 440
0
votes
12
replies
3.1k
views
problem with loading DESeq after upgrading from R 2.14 to R 2.15
GUI DESeq DEXSeq GUI DESeq DEXSeq
updated 13.6 years ago by ▴ 60 • written 13.6 years ago by ▴ 370
0
votes
0
replies
820
views
回复： TMM factors
Normalization edgeR DESeq Normalization edgeR DESeq
13.6 years ago Mark Robinson ▴ 880
0
votes
0
replies
1.3k
views
DESeq without replicates, Problem trying to obtain significant hits
DESeq DESeq
13.6 years ago Asma ▴ 10
0
votes
1
reply
2.3k
views
DeSeq - How to get the Biological Coefficient of Variation
edgeR DESeq edgeR DESeq
updated 13.6 years ago by ★ 3.8k • written 13.6 years ago by ▴ 50
0
votes
2
replies
2.9k
views
error in dispersion estimate
DESeq DESeq
13.6 years ago mariangela bonizzoni ▴ 20
0
votes
6
replies
1.7k
views
Genominator error when calling syste.time
Genominator DESeq Genominator DESeq
updated 13.6 years ago by ★ 6.5k • written 13.6 years ago by ▴ 200
0
votes
1
reply
1.5k
views
question about DESeq or tissue-specific expression
DESeq DESeq
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 450
0
votes
1
reply
803
views
Checking output of DESeq package analysis
DESeq DESeq
updated 13.6 years ago by ★ 3.8k • written 13.6 years ago by ★ 13k
512 results • Page 8 of 11
Recent ...
Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Awards • All
Scholar to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to James W. MacDonald 68k
Locations • All
WEHI, Melbourne, Australia, just now
United States, 3 minutes ago
Pittsburgh, United States, 7 minutes ago
United States, 47 minutes ago
United States, 1 hour ago
Traffic: 754 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6