Bioconductor DESeq2

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DESeq2 timecoursedata GeneExpression

updated 3 days ago by ATpoint ★ 4.1k • written 4 days ago by pangtaihin • 0

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243

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DESeq2 eigencorplot PCAtools

5 days ago • updated 3 days ago BioinfGuru ▴ 30

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113

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DESeq2 DifferentialExpression

updated 4 days ago by Michael Love 42k • written 5 days ago by Kasper • 0

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111

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DESeq2 PCAplot RNA-Seq DesignModel

updated 1 day ago by Michael Love 42k • written 2 days ago by shaunpeterson • 0

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373

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DESeq2

2 days ago • updated 1 hour ago Ken C • 0

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DESeq2 normalization Normalization acrossspecies

updated 5 days ago by Michael Love 42k • written 6 days ago by piemmea • 0

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DESeq2

51 minutes ago boczniak767 ▴ 720

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502

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DESeq2 pcaExplorer

updated 4 days ago by BioinfGuru ▴ 30 • written 6 days ago by Eric Katagirya • 0

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Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…

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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

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