Bioconductor DESeq2

Showing : DESeq2 • reset

votes

replies

254

views

DESeq2 timecoursedata GeneExpression

updated 3 days ago by ATpoint ★ 4.1k • written 4 days ago by pangtaihin • 0

votes

replies

502

views

DESeq2 pcaExplorer

updated 5 days ago by BioinfGuru ▴ 30 • written 6 days ago by Eric Katagirya • 0

votes

replies

395

views

DESeq2

2 days ago • updated 4 hours ago Ken C • 0

votes

replies

113

views

DESeq2 DifferentialExpression

updated 4 days ago by Michael Love 42k • written 5 days ago by Kasper • 0

vote

replies

244

views

DESeq2 eigencorplot PCAtools

6 days ago • updated 3 days ago BioinfGuru ▴ 30

votes

replies

112

views

DESeq2 PCAplot RNA-Seq DesignModel

updated 1 day ago by Michael Love 42k • written 2 days ago by shaunpeterson • 0

votes

views

DESeq2 normalization Normalization acrossspecies

updated 5 days ago by Michael Love 42k • written 6 days ago by piemmea • 0

votes

replies

views

DESeq2

3 hours ago boczniak767 ▴ 720

8 results • Page 1 of 1

Recent ...

Replies

Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

thank you!

Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

Votes

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Awards • All