Showing : DEXSeq • reset
0
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Error for plotDEXSeq and warning for estimateDispersions
graph DEXSeq
updated 11.0 years ago by ★ 1.9k • written 11.0 years ago by ▴ 20
2
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3
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2.3k
views
DEXSeqDataSetFromHTSeq object creation error
dexseq
11.0 years ago guffanti.alessandro • 0
2
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5
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2.1k
views
DEXSeq update results change
Sequencing DESeq DEXSeq Sequencing DESeq DEXSeq
11.1 years ago António Miguel de Jesus Domingues ▴ 510
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2
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2.0k
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question about DEXSeq from a count table, stopped at estimateExonFoldChanges
DEXSeq DEXSeq
updated 11.2 years ago by ★ 1.9k • written 11.2 years ago by ★ 1.3k
1
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4
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2.6k
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DEXSeq continous variable in model
RNASeq TimeCourse timecourse DEXSeq DESeq2 RNASeq TimeCourse timecourse DEXSeq DESeq2
updated 11.2 years ago by ★ 1.9k • written 11.2 years ago by ▴ 650
0
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1
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1.6k
views
DEXSeq continous variable in model
RNASeq GO DEXSeq DESeq2 RNASeq GO DEXSeq DESeq2
11.2 years ago Alex Gutteridge ▴ 650
0
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837
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question about how to understand exon usage coefficient value
DEXSeq DEXSeq
11.3 years ago Alejandro Reyes ★ 1.9k
0
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2
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1.2k
views
install previous version of DEXSeq (1.6.0)
DEXSeq DEXSeq
updated 11.3 years ago by ▴ 120 • written 11.3 years ago by ★ 13k
0
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1
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1.6k
views
DEXSeqDataSetFromHTSeq Error
DEXSeq DEXSeq
updated 11.3 years ago by ★ 3.8k • written 11.3 years ago by ★ 13k
0
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0
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1.1k
views
question about how to understand exon usage coefficient value
DEXSeq DEXSeq
11.4 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
938
views
Question about DEXSeq, DESeq, and pasilla
DESeq DEXSeq DESeq DEXSeq
updated 11.4 years ago by ★ 1.9k • written 11.4 years ago by ▴ 10
0
votes
2
replies
1.7k
views
dexseq fitDispersionFunction(ecs) error
GO DEXSeq GO DEXSeq
updated 11.5 years ago by ★ 1.9k • written 11.5 years ago by ▴ 550
0
votes
3
replies
2.4k
views
dexseq read.HTSeqCounts error
DEXSeq DEXSeq
updated 11.5 years ago by ★ 1.9k • written 11.5 years ago by ▴ 550
0
votes
1
reply
882
views
R 3.1.0 and dexseq 1.8.0
GO DEXSeq GO DEXSeq
updated 11.5 years ago by 25k • written 11.5 years ago by ▴ 550
0
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11
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2.4k
views
DEXSeq- ExonCountSet
DEXSeq DEXSeq
11.5 years ago Anitha Sundararajan ▴ 140
0
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6
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2.0k
views
DEXSeq output - count file
Annotation limma DEXSeq Annotation limma DEXSeq
updated 11.5 years ago by ▴ 310 • written 11.5 years ago by ★ 1.9k
0
votes
1
reply
927
views
DEXSeq dispersion trend estimation?
DEXSeq DEXSeq
updated 11.5 years ago by ★ 7.9k • written 11.5 years ago by ★ 1.9k
0
votes
1
reply
852
views
DEXSeq update results change
DEXSeq DEXSeq
updated 11.5 years ago by ★ 1.9k • written 11.5 years ago by ▴ 40
0
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0
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943
views
DEXSeq dispersion trend estimation?
DEXSeq DEXSeq
11.5 years ago Ryan C. Thompson ★ 7.9k
0
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5
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2.1k
views
DEXSeq output - count file
DEXSeq DEXSeq
11.6 years ago Rao,Xiayu ▴ 550
0
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2
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1.5k
views
dexseq zero length exons
Annotation DEXSeq Annotation DEXSeq
updated 11.6 years ago by ★ 1.9k • written 11.6 years ago by ▴ 310
0
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1
reply
2.0k
views
aggregate genes in DEXSeq
DEXSeq DEXSeq
updated 11.6 years ago by ★ 1.9k • written 11.6 years ago by ▴ 550
0
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3
replies
2.1k
views
dexseq_count.py SAM "NH" taq
DEXSeq DEXSeq
11.6 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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874
views
error in DEXSeq fitDispersionFunction()
GO DEXSeq GO DEXSeq
11.7 years ago Wolfgang Huber ★ 13k
0
votes
8
replies
3.0k
views
DEXSeq - too many exons in gene
Sequencing Annotation DEXSeq Sequencing Annotation DEXSeq
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ▴ 510
0
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6
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1.7k
views
DEXseq error on estimatelog2FoldChanges
DEXSeq DEXSeq
11.7 years ago Fabrice Tourre ▴ 970
0
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9
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2.0k
views
DEXSeq - identical p-values for all exons in a gene
DEXSeq DEXSeq
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 13k
0
votes
1
reply
926
views
DEXseq: fitDispersionFunction error
DEXSeq DEXSeq
updated 11.8 years ago by ★ 3.8k • written 11.8 years ago by ▴ 10
0
votes
1
reply
1.5k
views
DEXSeq: Paired End Analysis
DEXSeq DEXSeq
updated 12.0 years ago by ★ 3.8k • written 12.0 years ago by ▴ 150
0
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0
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1.4k
views
Measuring shifts in intronic expression independently of exons
GO DESeq DEXSeq ggbio GO DESeq DEXSeq ggbio
12.0 years ago James Perkins ▴ 60
0
votes
4
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1.8k
views
Measuring shifts in intronic expression independently of exons
GO DESeq DEXSeq ggbio GO DESeq DEXSeq ggbio
12.0 years ago James Perkins ▴ 60
0
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1
reply
1.2k
views
Fwd: Conservative results using DEXSeq
Cancer Ovarian DEXSeq DESeq2 Cancer Ovarian DEXSeq DESeq2
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 1.1k
0
votes
1
reply
856
views
Conservative results using DEXSeq
DEXSeq DEXSeq
updated 12.2 years ago by ★ 3.8k • written 12.2 years ago by ★ 13k
0
votes
1
reply
1.1k
views
mock comparison p-value histogram in DEXSeq
DEXSeq DEXSeq
updated 12.2 years ago by ★ 1.9k • written 12.2 years ago by ★ 13k
0
votes
2
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1.7k
views
DEXSeq - multiple conditions
edgeR DEXSeq edgeR DEXSeq
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 110
0
votes
1
reply
1.6k
views
DEXSeq questions on power and counting bins
DEXSeq DEXSeq
updated 12.2 years ago by ★ 13k • written 12.3 years ago by ★ 13k
0
votes
1
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1.3k
views
DEXSeq Help Needed: newExonCountSet() error messages
PROcess DEXSeq PROcess DEXSeq
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 150
1
vote
2
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1.4k
views
Study design in DEXSeq
Genetics DEXSeq Genetics DEXSeq
updated 12.3 years ago by ★ 1.9k • written 12.3 years ago by ▴ 510
0
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2
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1.1k
views
using a gtf file to map reads
GO GenomicFeatures DEXSeq GO GenomicFeatures DEXSeq
updated 12.3 years ago by ★ 1.9k • written 12.3 years ago by ★ 6.8k
0
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0
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1.5k
views
BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi
12.3 years ago Martin Morgan 25k
1
vote
4
replies
1.7k
views
problems running DEXseq
DEXSeq DEXSeq
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 10
0
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7
replies
2.6k
views
htseq and dexseq
DEXSeq DEXSeq
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 810
1
vote
0
replies
943
views
Study design in DEXSeq
DEXSeq DEXSeq
12.3 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
0
replies
966
views
DEXSeq output table
DESeq DEXSeq DESeq DEXSeq
12.3 years ago Guest User ★ 13k
0
votes
3
replies
4.7k
views
p-value vs adjusted p-value in DEXSeq
DEXSeq DEXSeq
updated 12.3 years ago by ★ 3.8k • written 12.3 years ago by ▴ 70
0
votes
2
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2.0k
views
DEXSeq: Problems trying to reproduce the example of the vignette
DEXSeq DEXSeq
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 190
0
votes
0
replies
1.3k
views
BioC 2013: Talks and Workshops
Visualization Cancer Ovarian DEXSeq DESeq2 BaseSpaceR Visualization Cancer Ovarian DEXSeq
12.3 years ago Martin Morgan 25k
0
votes
0
replies
976
views
DEXSeq: Factor
DEXSeq DEXSeq
12.3 years ago Bio152 ▴ 150
0
votes
0
replies
1.9k
views
DEXSeq, looking for a clever way for interpretation of results
Annotation GO DEXSeq Annotation GO DEXSeq
12.3 years ago Delasa Aghamirzaie ▴ 70
0
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1
reply
2.5k
views
Detecting differential usage of introns from RNA-seq data.
Preprocessing DEXSeq Preprocessing DEXSeq
updated 12.3 years ago by ★ 1.9k • written 12.3 years ago by ▴ 70
363 results • Page 6 of 8
Recent ...
Replies
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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