Showing : DEXseq • reset
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Exonic part number of genes on the reverse strand
DEXSeq DEXSeq
12.6 years ago Guest User ★ 13k
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DEXSeq: PlotMA issues
graph DESeq DEXSeq graph DESeq DEXSeq
12.7 years ago Alejandro Reyes ★ 1.9k
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1.2k
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a question in merging sam files for DEXSeq
DEXSeq DEXSeq
updated 12.7 years ago by ★ 3.8k • written 12.7 years ago by ▴ 80
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1
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1.1k
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DEXSeq troubles
DEXSeq DEXSeq
updated 12.7 years ago by ★ 1.9k • written 12.7 years ago by ▴ 150
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3
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2.9k
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DEXSeq Issue
Alignment Annotation GO Homo sapiens TranscriptDb PROcess GenomicFeatures DEXSeq Alignment
updated 12.7 years ago by 43k • written 12.7 years ago by ▴ 150
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6
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2.1k
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DEXSeq for 1 gene
DEXSeq DEXSeq
updated 12.7 years ago by ★ 1.9k • written 12.7 years ago by ▴ 120
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829
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DEXSeq: Creating sample
DEXSeq DEXSeq
12.7 years ago Bio152 ▴ 150
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1
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1.0k
views
DEXSeq User Friendly Guide (Start to Finish)
DEXSeq DEXSeq
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 150
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2
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3.3k
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DEXSeq error: Count files do not correspond to the flattened annotation file
Annotation GO DEXSeq Annotation GO DEXSeq
updated 12.7 years ago by ★ 3.8k • written 12.7 years ago by ▴ 50
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4
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1.9k
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DEXSeq on two-exon genes: how to specify a formula without redundant terms
safe DEXSeq safe DEXSeq
12.7 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
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1.3k
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DEXSeq: subsetting ExonCountSet ?
DESeq DEXSeq DESeq DEXSeq
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 50
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3
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4.0k
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DESeq versus CuffDiff2 for RNA-seq expression quantification in parasite-infected blood
Normalization DESeq DEXSeq Normalization DESeq DEXSeq
updated 12.8 years ago by ★ 3.8k • written 12.8 years ago by ▴ 40
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1.3k
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DEXSeq html report error
puma DEXSeq puma DEXSeq
12.8 years ago Natasha ▴ 440
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1
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2.3k
views
illegal operand when I run DEXSeq
DEXSeq DEXSeq
updated 12.9 years ago by ★ 1.3k • written 12.9 years ago by ★ 13k
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4
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2.0k
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illegal operand when I run DEXSeq
DEXSeq DEXSeq
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ★ 1.3k
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0
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1.2k
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aggregate genes in DEXSeq
DEXSeq DEXSeq
12.9 years ago Alejandro Reyes ★ 1.9k
0
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7
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2.8k
views
Detecting differential usage of introns from RNA-seq data.
DEXSeq DEXSeq
updated 13.0 years ago by ★ 1.9k • written 13.0 years ago by ▴ 320
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4
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1.3k
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DEXseq: several "1" and "NA" in padjust column
DEXSeq DEXSeq
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 140
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1
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1.3k
views
DEXSeq package - read.HTSeqCount function error
Annotation DEXSeq Annotation DEXSeq
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 20
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3
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1.6k
views
DEXSeq: building exon count set
DESeq DEXSeq DESeq DEXSeq
updated 13.0 years ago by ★ 1.9k • written 13.0 years ago by ▴ 140
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2
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1.3k
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DEXSeq and parallel, orphan processes.
GO DEXSeq GO DEXSeq
updated 13.0 years ago by ★ 1.9k • written 13.0 years ago by ▴ 30
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1
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1.2k
views
DEXSeq package - read.HTSeqCount function error
DEXSeq DEXSeq
updated 13.0 years ago by ★ 1.9k • written 13.0 years ago by ▴ 20
0
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4
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1.3k
views
DEXSeq all p-values are 1
GO DEXSeq GO DEXSeq
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ★ 13k
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0
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1.6k
views
get synthetic exon dataset with easyRNASeq
RNASeq Alignment Annotation Normalization GO PROcess GenomicRanges DEXSeq easyRNASeq GO
13.2 years ago delhomme@embl.de ★ 1.2k
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3
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1.3k
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DEXSeq offset term
Normalization PROcess DEXSeq Normalization PROcess DEXSeq
updated 13.3 years ago by ★ 1.9k • written 13.3 years ago by ★ 13k
1
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2
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1.5k
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DEXSeq: Difference in splicing
graph DEXSeq graph DEXSeq
updated 13.3 years ago by ★ 1.9k • written 13.3 years ago by ★ 13k
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9
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2.7k
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DEXSeq many exons marked as not testable
DEXSeq DEXSeq
updated 13.4 years ago by ▴ 10 • written 13.4 years ago by ▴ 70
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7
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3.6k
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How to retrieve exon ID and gene ID from exon coordinates?
RNASeq DEXSeq RNASeq DEXSeq
updated 13.4 years ago by 68k • written 13.4 years ago by ▴ 340
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1
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4.6k
views
RNA-seq analysis and two-way ANOVAs
edgeR baySeq DEGseq DESeq DEXSeq edgeR baySeq DEGseq DESeq DEXSeq
updated 13.4 years ago by 53k • written 13.4 years ago by ▴ 160
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1
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1.2k
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DEXSeq: Error: all(unlist(lapply(design, class)) == "factor") is not TRUE
DEXSeq DEXSeq
updated 13.5 years ago by ★ 1.9k • written 13.5 years ago by ▴ 90
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4
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1.1k
views
error in DEXSeq fitDispersionFunction()
DEXSeq DEXSeq
updated 13.5 years ago by ▴ 120 • written 13.5 years ago by ★ 1.9k
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1
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1.3k
views
multicore and DEXSeq
DEXSeq DEXSeq
updated 13.5 years ago by ▴ 50 • written 13.5 years ago by ★ 1.9k
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1
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1.1k
views
clarification on DEXSeq output
DEXSeq DEXSeq
updated 13.5 years ago by ★ 3.8k • written 13.5 years ago by ▴ 190
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1
reply
1.0k
views
error in DEXSeq version 1.3.13
DEXSeq DEXSeq
updated 13.5 years ago by ★ 1.9k • written 13.5 years ago by ▴ 190
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2
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2.2k
views
counts from HTSeq vs DEXSeq
DEXSeq DEXSeq
updated 13.5 years ago by ★ 3.8k • written 13.5 years ago by ▴ 190
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1
reply
2.2k
views
Pasilla Package
DEXSeq DEXSeq
updated 13.6 years ago by ★ 1.9k • written 13.6 years ago by ★ 13k
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4
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1.9k
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DEXSeq error
DEXSeq DEXSeq
updated 13.6 years ago by ★ 1.9k • written 13.6 years ago by ▴ 140
0
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1
reply
1.0k
views
DEXSeq question
DEXSeq DEXSeq
updated 13.6 years ago by ★ 1.9k • written 13.6 years ago by ▴ 190
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4
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2.0k
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A question with DEXSeq package: inconsistency between normalized counts vs. fitted expression, fitted splicing or fold changes
Cancer DEXSeq Cancer DEXSeq
updated 13.6 years ago by ★ 1.9k • written 13.6 years ago by ▴ 40
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1
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1.0k
views
RnaSeqTutorial Package
Annotation BSgenome BSgenome DESeq DEXSeq Annotation BSgenome BSgenome DESeq DEXSeq
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ★ 13k
1
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3
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2.9k
views
interpreting DEXSeq output
DEXSeq DEXSeq
updated 13.6 years ago by ★ 1.9k • written 13.6 years ago by ▴ 160
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4
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1.7k
views
DEXSeq package: Error in DEXSeqHTML
DEXSeq DEXSeq
updated 13.7 years ago by ★ 1.9k • written 13.7 years ago by ▴ 50
0
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2
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2.4k
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DEXSeq filtering
DEXSeq DEXSeq
updated 13.7 years ago by ★ 3.8k • written 13.7 years ago by ▴ 370
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0
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856
views
DESeq error thrown during estimateDispersions w/ coxReid method
DESeq DEXSeq DESeq DEXSeq
13.7 years ago Simon Anders ★ 3.8k
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0
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935
views
DESeq error thrown during estimateDispersions w/ coxReid method
Cancer DEXSeq Cancer DEXSeq
13.8 years ago Steve Lianoglou ★ 13k
0
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12
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3.2k
views
problem with loading DESeq after upgrading from R 2.14 to R 2.15
GUI DESeq DEXSeq GUI DESeq DEXSeq
updated 13.8 years ago by ▴ 60 • written 13.8 years ago by ▴ 370
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3
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1.5k
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multifactorial analysis
DEXSeq DEXSeq
updated 13.8 years ago by 53k • written 13.8 years ago by ▴ 810
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2
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1.7k
views
DEXSeq error during fold change calculation
Alignment DEXSeq Alignment DEXSeq
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ★ 13k
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1
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1.8k
views
DEXSeq with no biological replicate?
DEXSeq DEXSeq
updated 13.8 years ago by ★ 3.8k • written 13.8 years ago by ▴ 230
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2
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3.2k
views
DESeq vs DEXSeq
RNASeq Annotation DESeq DEXSeq RNASeq Annotation DESeq DEXSeq
updated 13.9 years ago by ★ 3.8k • written 13.9 years ago by ▴ 280
363 results • Page 7 of 8
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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