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Dese
•
reset
2
votes
2
replies
572
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
6 months ago
BioinfGuru
▴ 70
0
votes
1
reply
401
views
collapseReplicates dimension error
DESeq2
Dese
updated 11 months ago by
Michael Love
43k • written 11 months ago by
Léa
• 0
0
votes
3
replies
578
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 12 months ago by
Xu
• 0
0
votes
2
replies
589
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
13 months ago
pl23
• 0
0
votes
2
replies
883
views
Linear Model Fitting and Colinearity
dese
DESeq2
14 months ago
Hugo
• 0
0
votes
5
replies
1.2k
views
DESeq2 analysis
DESe
DESeq2
19 months ago
Adèle
• 0
0
votes
2
replies
1.8k
views
Handling NA's in Deseq2
Dese
DESeq2
21 months ago
Asger Mølgaard
• 0
2
votes
17
replies
2.7k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 21 months ago by
Michael Love
43k • written 22 months ago by
Alina
• 0
4
votes
5
replies
1.8k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 8 months ago by
ij283
• 0 • written 23 months ago by
Bernardo
▴ 10
3
votes
3
replies
1.2k
views
Merging two plated in R
dese
DESeq2
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.1k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
1.7k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
3.1 years ago
aedavids
▴ 20
0
votes
2
replies
1.1k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
3.3 years ago
wilfried.guiblet
• 0
0
votes
2
replies
815
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
Dinesh
• 0
2
votes
3
replies
1.2k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
glennli
• 0
0
votes
2
replies
1.1k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
hpapoli
• 0
16 results • Page
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Comment: Conumee for EPIC and EPICv2 copy number
by
Adam
• 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient.
by
canarias
• 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
Comment: Gene Set Enrichment Analysis in Bioconductor course
by
info
▴ 10
If you are interested in Gene Set Enrichment Analysis in R, you can still join us next week for this 4-day Physalia course on GSEA in R and…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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