Showing : Dexseq • reset
8
votes
12
replies
4.4k
views
DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FUN(X[[i]], ...) : subscript out of bounds" (DEXSeqDataSetFromHTSeq)
DEXSeq
updated 11 months ago by ▴ 30 • written 3.1 years ago by ▴ 380
4
votes
6
replies
1.3k
views
Surprising behavior for DEXseq dispersion estimate plot?
DESeq2 DEXSeq
updated 6 weeks ago by ★ 4.8k • written 10 weeks ago by • 0
0
votes
1
reply
444
views
Run DEXSeq successfully but got a result that padj==1 in all genes
DEXSeq
updated 10 months ago by ★ 4.8k • written 10 months ago by • 0
2
votes
1
reply
637
views
How to design DEXSeq formula for multiple variables
DEXSeq
12 months ago • updated 11 months ago Sara • 0
0
votes
1
reply
108
views
Make DEXSeq plot normal scale
DEXSeq Dexseq
updated 22 days ago by 68k • written 23 days ago by • 0
0
votes
0
replies
160
views
My DEXSeqDataSetFromSE is returning an Error, but all of my checks to seem to indicate that this error is not present
DifferentialSplicing RNASeqData DEXSeq
3 months ago cftattersfield • 0
6 results • Page 1 of 1
Recent ...
Replies
Comment: EuroBioC2023 abstract submission is open! by eilishhill8 • 0
Thanks for sharing this. I got it clearly now. Submit here: [https://openreview.net/group?id=bioconductor.org/EuroBioC/2023/][1] [melon sa…
Comment: European Bioconductor Conference 2023 planning by rasafreelancer • 0
@[chill guy clicker][1] Sounds like a fantastic opportunity! I'm really curious about the emerging technologies that will be highlighted at…
Answer: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm by Hervé Pagès 16k
This should be fast: ```r library(GenomicAlignments) extractMismatchesFromGAlignments <- function(ga) { stopifnot(is(ga, "GAlign…
Answer: GAlignments Cigar to GRanges by Hervé Pagès 16k
```r > as(gal, "GRangesList") GRangesList object of length 2: [[1]] GRanges object with 2 ranges and 0 metadata columns: seqnames …
Comment: DESEq2 comparison with mulitple cell types under 2 conditions by boczniak767 ▴ 740
Dear @mikelove , this method is very appealing but does it avoid making not meaningful comparisons like "1KO" vs "2WT" (using example fro…
Votes
When running contrasts, does it use normalized read counts?
When running contrasts, does it use normalized read counts?
Importing Salmon counts with tximport with host and virus genomes
Normalization / size factors of samples with high expression of few genes (viral infection)
A: Mult-way interaction design in limma
Awards • All
Popular Question to RobKo ▴ 10
Popular Question to Gordon Smyth 52k
Popular Question to gabriella.jacobson-eisenberg ▴ 20
Popular Question to nazaninhoseinkhan • 0
Popular Question to petergrahamclark • 0
Locations • All
France, 4 minutes ago
Israel, 1 hour ago
Australia/Melbourne, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
The city by the bay, 4 hours ago
Traffic: 1251 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6