Bioconductor DistanceToNearest

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rtracklayer ranges distanceToNearest

22 months ago robjohn70000 • 0

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1.1k

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GenomicRanges GenomicFeatures grange distanceToNearest R

6.0 years ago rmash ▴ 20

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1.5k

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GenomicRanges distancetonearest strandedness

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by shraddha.pai • 0

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1.7k

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GRanges distancetonearest

updated 7.9 years ago by Julie Zhu ★ 4.3k • written 7.9 years ago by chitsazanalex ▴ 10

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chipenrich granges distancetonearest function dataframe

8.0 years ago rbronste ▴ 60

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2.9k

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genomicranges DistanceToNearest

updated 9.2 years ago by Valerie Obenchain ★ 6.8k • written 9.2 years ago by roladali ▴ 20

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Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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