Biostar DistanceToNearest

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468

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GenomicRanges GenomicFeatures grange distanceToNearest R

3.4 years ago rmash ▴ 20

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630

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GenomicRanges distancetonearest strandedness

updated 5.0 years ago by Valerie Obenchain ★ 6.7k • written 5.0 years ago by shraddha.pai • 0

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787

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GRanges distancetonearest

updated 5.3 years ago by Julie Zhu ★ 4.3k • written 5.3 years ago by chitsazanalex ▴ 10

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3.5k

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chipenrich granges distancetonearest function dataframe

5.4 years ago rbronste ▴ 60

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1.4k

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genomicranges DistanceToNearest

updated 6.6 years ago by Valerie Obenchain ★ 6.7k • written 6.6 years ago by roladali ▴ 20

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Comment: how can I do gene differential analysis on data after vst by linouhao ▴ 20

Thanks a lot. so do you know when professor Gordon Smyth says 'Differential expression analysis of vst values can be performed by limma-t…

Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Apologies. The first line should be result <- dba(sampleSheet=samples) I've gone back and edited previous replies to reflect this.

Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k

You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…

Comment: Help with Error in DiffBind by Chris • 0

Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…

Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k

In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…

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Analyzing RNA-seq data by WGCNA

A: Analyzing RNA-seq data by WGCNA

Comment: Help with Error in DiffBind

WGCNA: Module preservation vs consensus analysis

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Supporter to linouhao ▴ 20