Showing : EDA • reset
2
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Comparing discrete variable to PCA
EDA pcaExplorer PCAtools PCA
updated 5 months ago by ▴ 10 • written 21 months ago by ▴ 100
1
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5
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Paired design, normalisation and batch effects.
deseq2 eda sva rna-seq
updated 5.8 years ago by ▴ 600 • written 5.8 years ago by ▴ 10
2 results • Page 1 of 1
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Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70
Any help on why `pcoverageByTranscript` generate such errors? thanks.
Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL) by Hervé Pagès 15k
And also please don't ignore these warnings: 1: package ‘GenomicFeatures’ was built under R version 4.1.1 2: package ‘BiocGenerics’ was b…
Comment: broken chain import in liftOver by Marcel Ramos 570
You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached: ```r library(AnnotationHub) query(ah <- Annot…
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated. by James W. MacDonald 59k
See `removeBatchEffect` in the `limma` package.
Comment: GDCdownload Directory Problem :( by Marcel Ramos 570
FWIW, `TCGAutils` is not a related package.
Votes
Answer: broken chain import in liftOver
Answer: toGRanges help!
Answer: toGRanges help!
Comment: CPM after RUVseq
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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