Bioconductor EnsDb.Hsapiens.v86

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EnsDb.Hsapiens.v86 EnsDb.Hsapiens.v79 EnsDb.Hsapiens.v75

2.7 years ago Taeim • 0

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installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb

2.9 years ago elmfinds • 0

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EnsDb.Hsapiens.v86 gene

3.2 years ago beslinail • 0

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ens ensembldb EnsDb.Hsapiens.v86 EnsDb.Rnorvegicus.v75

4.0 years ago Ahdee ▴ 60

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salmon EnsDb.Hsapiens.v86 tximport

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by TJ • 0

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tximport ensembldb EnsDB.hsapiens.v86

updated 6.3 years ago by Bioconductor Community 0 • written 6.5 years ago by michaelschoeber ▴ 20

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Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

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Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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