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Exon
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3
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2.8k
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read count summed over exons is greater tham the gene-level read count using featureCounts
rsubread
featurecounts
exon
mRNAseq
updated 6.9 years ago by
Wei Shi
★ 3.6k • written 6.9 years ago by
inah
▴ 10
0
votes
2
replies
1.8k
views
quasR - how are exon identifiers for exon counts determined
rnaseq
exon
quasr
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
sven.schuierer
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
1
vote
3
replies
1.3k
views
DEXSeq with large(ish) number of samples
DEXSeq
exon
memory
dispersions
estimateDispersions
4.0 years ago
andreismolnikov00
• 0
1
vote
5
replies
861
views
DEXSeq output included non-exist exons
DEXSeq
exon_definition
exon
updated 10 months ago by
Alejandro Reyes
★ 1.9k • written 10 months ago by
zhangpeng1202
• 0
0
votes
1
reply
842
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
23 months ago
NIK
• 0
1
vote
1
reply
653
views
Increased number of exons in DEXSeq
DEXSeq
exon
updated 2.1 years ago by
Alejandro Reyes
★ 1.9k • written 2.1 years ago by
jochen
• 0
0
votes
0
replies
387
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
12 months ago
mahima.g
• 0
8 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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