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CDS
•
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0
votes
4
replies
1.8k
views
Merging each element of a list of Genomic range
txdb
granges
cds
orf
R
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
q.thomas
• 0
1
vote
3
replies
1.5k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.5 years ago by
rcavalca
▴ 140 • written 6.5 years ago by
xie186
• 0
2
votes
1
reply
1.7k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
rubi
▴ 110
3
votes
1
reply
2.0k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
2.7k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures
txdb.hsapiens.ucsc.hg19.knowngene
cds
7.9 years ago
madsheilskov
▴ 10
0
votes
3
replies
1.9k
views
how to get complete cds annotation information ?
cds
8.6 years ago
KB
▴ 50
2
votes
10
replies
2.3k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.6 years ago by
madsheilskov
▴ 10
0
votes
1
reply
1.4k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.7 years ago by
balajee
• 0 • written 8.6 years ago by
madsheilskov
▴ 10
8 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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