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2.4k

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txdb granges cds orf R

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by q.thomas • 0

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2.1k

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genomeintervals UTRs exons CDS GenomicRanges

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by rubi ▴ 110

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2.5k

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biomart bioconductor grangeslist cds ribosome profiling

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Walter F. Baumann ▴ 10

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3.5k

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genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds

9.4 years ago madsheilskov ▴ 10

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2.4k

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cds

10.2 years ago KB ▴ 50

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3.2k

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genomicfeatures genomicranges cds overlap

updated 10.2 years ago by Michael Lawrence ★ 11k • written 10.2 years ago by madsheilskov ▴ 10

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1.9k

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genomicfeatures genomicranges cds overlap

updated 4.2 years ago by balajee • 0 • written 10.2 years ago by madsheilskov ▴ 10

7 results • Page 1 of 1

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Answer: Bulk RNAseq analysis for by James W. MacDonald 68k

In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…

Comment: Jobs at Ensembl by frostybuddyy • 0

I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k