Showing : gage package • reset
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GAGE for non model organism
gage package gage
3.2 years ago melkile26 • 0
1
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2
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441
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
3.2 years ago atakanekiz ▴ 30
5
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7
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1.9k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 3.4 years ago by 58k • written 3.4 years ago by ▴ 20
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1
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1.4k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.6 years ago by ★ 1.5k • written 3.6 years ago by • 0
2
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4
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617
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 30
1
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0
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934
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DESeq2 - GAGE workflow
gage package deseq2
4.1 years ago sup230 ▴ 30
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2
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822
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 4.9 years ago by ★ 1.5k • written 4.9 years ago by • 0
1
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2
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782
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
5.1 years ago joanito.liberti • 0
0
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1
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499
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Question on Gage
gage package path.ids RNA-Seq
5.1 years ago rl1385 • 0
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0
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553
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
5.2 years ago smt8n • 0
10 results • Page 1 of 1
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Answer: Not able to Annotate CpG Island using methylKit by tanmayroy1979 • 0
Hi I resolved the problem. The error was coming because of Chromosome numbering. Bed files was having "Chr" which i removed and resolved…
Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k
I have just confirmed there is no difference between edgeR 3.26.1 and edgeR 3.26.8 by running an analysis similar to yours first with edgeR…
Comment: VST transformation and covariates in the TCGA TARGET GTEx dataset by S ▴ 10
Hi Michael. Thanks for your reply. Yes, the dataset includes samples from these three projects TCGA, GTEX and TARGET. I selected just solid…
Comment: DESeq2 output explanation by krushnach80 • 0
"would expect you to set HSC as the reference level " yes this i had done . "report LSC vs HSC (read: log (LSC / HSC) as the LFC" thank you…
Comment: rtracklayer: error in importing bigwig file in r in windows by millerh1 • 0
I'm currently experiencing the same. I'm on `rtracklayer` version 1.53.1. On ubuntu: ``` > import("https://rlbase-data.s3.amazonaws.com/c…
Votes
Comment: deseq2 machine sizing best practices for very large data set
Comment: Warning messages on Apple M1 BigSur
Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset
Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset
Comment: DESeq2 output explanation
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