Biostar Gage package

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534

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gage package gage

4.0 years ago melkile26 • 0

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623

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gage gage package gene expression matrix gene set analysis

4.1 years ago atakanekiz ▴ 30

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2.1k

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gage package error

updated 4.2 years ago by James W. MacDonald 60k • written 4.2 years ago by Miskey, Csaba ▴ 20

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2.4k

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gage gage package pathview rna-seq

updated 5 months ago by Helen • 0 • written 4.5 years ago by tarun2 • 0

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813

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kegg geneset genelist gage package

updated 5.0 years ago by Gordon Smyth 46k • written 5.0 years ago by sup230 ▴ 30

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1.0k

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gage package deseq2

5.0 years ago sup230 ▴ 30

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965

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gage gage package

updated 5.8 years ago by Luo Weijun ★ 1.5k • written 5.8 years ago by Michael • 0

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927

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R gage package rnaseq pathview

6.0 years ago joanito.liberti • 0

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614

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gage package path.ids RNA-Seq

6.0 years ago rl1385 • 0

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643

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

6.1 years ago smt8n • 0

10 results • Page 1 of 1

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Comment: OPLS-DA: confidence interval for accuracy metric by etienne.thevenot ▴ 20

- The bootstrapping approach can be used to compute the CIs: see here for an example: Mendez et al. (2019). « A comparative evaluation …

Comment: Data input for aracne2regulon function in viper package by xlal • 0

You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…

Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

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Answer: spot- vs cell-level data access

Answer: unable to install.packages("spatialLIBD")

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

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