Showing : gage package • reset
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GAGE for non model organism
gage package gage
6.7 years ago melkile26 • 0
1
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2
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1.5k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.7 years ago atakanekiz ▴ 30
5
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7
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3.2k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 20
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2
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4.1k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.0 years ago by • 0 • written 7.1 years ago by • 0
2
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4
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2.3k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.6 years ago by 52k • written 7.6 years ago by ▴ 30
1
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0
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1.7k
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DESeq2 - GAGE workflow
gage package deseq2
7.6 years ago sup230 ▴ 30
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2
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1.9k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.4 years ago by ★ 1.6k • written 8.4 years ago by • 0
1
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2
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1.7k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
8.6 years ago joanito.liberti • 0
0
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1
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1.1k
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Question on Gage
gage package path.ids RNA-Seq
8.6 years ago rl1385 • 0
0
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0
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1.1k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
8.7 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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