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GAGE package
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4.1k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 3.0 years ago by
Helen
• 0 • written 7.0 years ago by
tarun2
• 0
0
votes
0
replies
1.1k
views
GAGE for non model organism
gage package
gage
6.6 years ago
melkile26
• 0
1
vote
2
replies
1.4k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
6.6 years ago
atakanekiz
▴ 30
5
votes
7
replies
3.1k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 6.8 years ago by
James W. MacDonald
68k • written 6.8 years ago by
Miskey, Csaba
▴ 20
2
votes
4
replies
2.2k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 7.5 years ago by
Gordon Smyth
52k • written 7.5 years ago by
sup230
▴ 30
1
vote
0
replies
1.7k
views
DESeq2 - GAGE workflow
gage package
deseq2
7.6 years ago
sup230
▴ 30
0
votes
2
replies
1.9k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 8.3 years ago by
Luo Weijun
★ 1.6k • written 8.4 years ago by
Michael
• 0
1
vote
2
replies
1.7k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
8.5 years ago
joanito.liberti
• 0
0
votes
1
reply
1.1k
views
Question on Gage
gage package
path.ids
RNA-Seq
8.5 years ago
rl1385
• 0
0
votes
0
replies
1.1k
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
8.6 years ago
smt8n
• 0
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Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
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Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
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Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
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