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GAlignments
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reset
1
vote
3
replies
2.5k
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how to renameSeqlevels-GenomicAlignments
annotation
GAlignments
bamfileobject
renameseqlevels
7.2 years ago
teresati
▴ 10
2
votes
2
replies
1.2k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 4.0 years ago by
Hervé Pagès
16k • written 4.0 years ago by
Robert
▴ 10
2
votes
1
reply
1.0k
views
inconsistent results from applyPileups and pileLettersAt
Rsamtools
GAlignments
pileup
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
jesper.gadin
▴ 10
3
votes
1
reply
4.7k
views
Creating a count matrix from 8 bam files in R (RNAseq experiment)
deseq2
rnaseq
count matrix
galignments
granges
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
bananaal1
▴ 10
4 results • Page
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Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
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