Bioconductor GPos

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findOverlaps GPos GenomicRanges subsetByOverlaps

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by Robert ▴ 10

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GenomicRanges unique GPos

3.3 years ago • updated 3.1 years ago maltethodberg ▴ 180

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840

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GenomicRanges GPos

4.5 years ago Charles Plessy ▴ 180

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genomicranges granges gpos

updated 5.4 years ago by Hervé Pagès 16k • written 6.1 years ago by maltethodberg ▴ 180

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genomicranges gpos granges

updated 6.1 years ago by Hervé Pagès 16k • written 6.1 years ago by maltethodberg ▴ 180

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software error snplocs gpos

updated 6.4 years ago by Hervé Pagès 16k • written 6.5 years ago by j.abbott • 0

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genomicranges gpos

updated 6.8 years ago by Hervé Pagès 16k • written 6.8 years ago by maltethodberg ▴ 180

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904

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genomicranges gpos

6.8 years ago maltethodberg ▴ 180

8 results • Page 1 of 1

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Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…

Comment: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Agree. > for library size and the average transcript length, what additional components will dds <- DESeq(dds) continue to normalize? Will…

Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k

> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

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Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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Popular Question to Assa Yeroslaviz ★ 1.5k