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GTEx
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reset
1
vote
3
replies
1.0k
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Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 12 months ago by
ATpoint
★ 4.1k • written 12 months ago by
David
▴ 20
2
votes
2
replies
1.9k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
23 months ago
David
▴ 20
2
votes
2
replies
1.2k
views
Gene Selection GTex for DESeq2 Analysis
DESeq2
GTEx
3.2 years ago
Bine
▴ 40
0
votes
1
reply
3.3k
views
Is GTEx age and sex data available via the recount package?
recount
gtex
updated 5.5 years ago by
Leonardo Collado Torres
★ 1.0k • written 5.5 years ago by
abe
• 0
2
votes
2
replies
1.1k
views
Error in ebayes in limma when analyzing GTEx data
limma
voom
gtex
6.1 years ago
mico
• 0
1
vote
2
replies
1.8k
views
DESeq2 for differential gene expression on GTEx dataset
rnaseq
deseq2
gtex
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
vikram
• 0
2
votes
0
replies
3.9k
views
Tutorial:
BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor
public data
TCGA
GTEx
Tutorial
6.8 years ago
shepherl
3.9k
7 results • Page
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Replies
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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