Showing : GTEx • reset
1
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3
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Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2 recount GTEx TCGA recount3
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by ▴ 20
2
votes
2
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3.7k
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Create TPM gene tables/dataframe from ReCount3
recount3 TCGA GTEx DESeq2
3.6 years ago David ▴ 20
2
votes
2
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2.2k
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Gene Selection GTex for DESeq2 Analysis
DESeq2 GTEx
4.9 years ago Bine ▴ 50
0
votes
1
reply
4.3k
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Is GTEx age and sex data available via the recount package?
recount gtex
updated 7.2 years ago by ★ 1.1k • written 7.2 years ago by • 0
2
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2
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1.6k
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Error in ebayes in limma when analyzing GTEx data
limma voom gtex
7.8 years ago mico • 0
1
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2
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2.4k
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DESeq2 for differential gene expression on GTEx dataset
rnaseq deseq2 gtex
updated 8.2 years ago by 43k • written 8.2 years ago by • 0
2
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0
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4.9k
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Tutorial: BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor
public data TCGA GTEx Tutorial
8.5 years ago shepherl 4.3k
7 results • Page 1 of 1
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Comment: limpa analysis advice by Gordon Smyth 53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
Comment: limpa analysis advice by SamGG ▴ 360
Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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