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GUIDEseq
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0
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0
replies
403
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
15 months ago
StayM
• 0
0
votes
6
replies
1.5k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 3.2 years ago by
Julie Zhu
★ 4.3k • written 3.3 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
882
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.4 years ago by
Julie Zhu
★ 4.3k • written 3.4 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
611
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.4 years ago
sharvari gujja
▴ 40
0
votes
0
replies
642
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.4 years ago
sharvari gujja
▴ 40
0
votes
0
replies
719
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.5 years ago
sharvari gujja
▴ 40
3
votes
1
reply
994
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
David Kuo
• 0
0
votes
2
replies
1.2k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
Tiffany
• 0
0
votes
4
replies
1.4k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.2k
views
GUIDEseq BED input error
GUIDEseq
5.9 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.3k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
968
views
GUIDEseq outputDir error
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.4k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
914
views
GUIDEseq bam input
GUIDEseq
bam
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.4k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
8.0 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
1.9k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
aamir.mir
• 0
2
votes
1
reply
1.4k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
aamir.mir
• 0
17 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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