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GUIDEseq
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452
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Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
18 months ago
StayM
• 0
0
votes
6
replies
1.7k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
948
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.7 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
693
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.7 years ago
sharvari gujja
▴ 40
0
votes
0
replies
688
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.7 years ago
sharvari gujja
▴ 40
0
votes
0
replies
777
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.7 years ago
sharvari gujja
▴ 40
3
votes
1
reply
1.1k
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.9 years ago by
Julie Zhu
★ 4.3k • written 4.9 years ago by
David Kuo
• 0
0
votes
2
replies
1.4k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 5.0 years ago by
Julie Zhu
★ 4.3k • written 5.0 years ago by
Tiffany
• 0
0
votes
4
replies
1.5k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 6.1 years ago by
Julie Zhu
★ 4.3k • written 6.1 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.3k
views
GUIDEseq BED input error
GUIDEseq
6.1 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.3k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
1.0k
views
GUIDEseq outputDir error
GUIDEseq
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.5k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
977
views
GUIDEseq bam input
GUIDEseq
bam
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.5k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
8.2 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
2.1k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 8.4 years ago by
Julie Zhu
★ 4.3k • written 8.4 years ago by
aamir.mir
• 0
2
votes
1
reply
1.5k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 8.4 years ago by
Julie Zhu
★ 4.3k • written 8.4 years ago by
aamir.mir
• 0
17 results • Page
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Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
emily.wolfrum
• 0
Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…
Answer: Are individual-mouse-based statistics possible in CellChat?
by
ATpoint
★ 5.0k
Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
by
ATpoint
★ 5.0k
apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Martin Morgan
25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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