Bioconductor GVIZ

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DMR Methylation R Gviz

updated 6 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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618

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rtracklayer Gviz

updated 6 months ago by Hervé Pagès 16k • written 6 months ago by yujin ▴ 10

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458

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rtracklayer UCSC Gviz

6 months ago yujin ▴ 10

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DMRcate Gviz

updated 24 days ago by Tim Peters ▴ 180 • written 14 months ago by jose.ramirez1 ▴ 10

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214

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Gviz

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by ilaria.maurizio • 0

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gviz Saccharomyces_cerevisiae Gviz ideogram

updated 8 months ago by Robert Ivanek ▴ 730 • written 8 months ago by Michael • 0

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1.8k

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Gviz coMET

17 months ago • updated 7 months ago Daniel E. Weeks ▴ 30

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367

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Gviz

6 months ago dbsgtk • 0

8 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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