Bioconductor GViz

Showing : GViz • reset

vote

replies

1.4k

views

DMR Methylation R Gviz

updated 6 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

vote

replies

621

views

rtracklayer Gviz

updated 6 months ago by Hervé Pagès 16k • written 6 months ago by yujin ▴ 10

votes

replies

1.8k

views

Gviz coMET

17 months ago • updated 7 months ago Daniel E. Weeks ▴ 30

vote

replies

1.0k

views

DMRcate Gviz

updated 26 days ago by Tim Peters ▴ 180 • written 14 months ago by jose.ramirez1 ▴ 10

votes

215

views

Gviz

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by ilaria.maurizio • 0

votes

replies

783

views

gviz Saccharomyces_cerevisiae Gviz ideogram

updated 8 months ago by Robert Ivanek ▴ 730 • written 8 months ago by Michael • 0

votes

replies

368

views

Gviz

6 months ago dbsgtk • 0

vote

replies

462

views

rtracklayer UCSC Gviz

6 months ago yujin ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Awards • All

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180