Bioconductor GeneOverlap

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GeneOverlap heatmaps

10 months ago Johanna • 0

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GeneOverlap multiple figures heatmap

updated 5.2 years ago by James W. MacDonald 68k • written 5.2 years ago by C T ▴ 140

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genomicranges geneoverlap findoverlaps

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by yao.h.1988 • 0

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GeneOverlap DEGgenes affymetrixchip bioconductor

10.1 years ago svlachavas ▴ 840

4 results • Page 1 of 1

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Votes

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

Answer: How to formulate 2 factor nested design in DESeq2

A: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.

A: DESeq2 Dispersion Per Condition

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