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GeneOverlap
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0
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316
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Error in drawHeatmap function
GeneOverlap
heatmaps
10 months ago
Johanna
• 0
0
votes
3
replies
1.0k
views
how to draw multiple heatmap from GeneOverlap
GeneOverlap
multiple figures
heatmap
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
C T
▴ 140
0
votes
6
replies
2.2k
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Is that an efficient way to find the overlapped , upstream and downstream genes for a bunch of genes
genomicranges
geneoverlap
findoverlaps
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.1 years ago by
yao.h.1988
• 0
0
votes
0
replies
1.4k
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Correst use of GeneOverlap R Package
GeneOverlap
DEGgenes
affymetrixchip
bioconductor
10.1 years ago
svlachavas
▴ 840
4 results • Page
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Comment: Cannot extract size factor from DESeq2 analysis
by
s.malik
• 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Comment: Design formula for circadian time-course data for vst() function
by
Vishnu
• 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2
by
Tom
• 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function
by
ATpoint
★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Votes
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A: Contrasts & coefficients in limma
Answer: How to formulate 2 factor nested design in DESeq2
A: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
A: DESeq2 Dispersion Per Condition
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