Showing : GenomicFiles • reset
6
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7
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2.1k
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findOverlaps(), queryHits and subjectHits()
GenomicFiles
updated 17 months ago by 16k • written 17 months ago by • 0
0
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0
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942
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
4.4 years ago koushik • 0
2
votes
6
replies
1.9k
views
memory leak when subsampling BAM
GenomicFiles ShortRead Rsamtools
4.8 years ago robmaz77 ▴ 20
1
vote
2
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1.1k
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 80
3
votes
2
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1.4k
views
ranges input for GenomicFiles
genomicfiles
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 80
3
votes
2
replies
1.6k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles reduceByRange
updated 8.3 years ago by ★ 6.8k • written 8.3 years ago by ▴ 180
3
votes
3
replies
1.5k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles BiocParallel
updated 8.5 years ago by 4.2k • written 8.6 years ago by ▴ 20
4
votes
2
replies
1.8k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools genomicalignments genomicfiles
updated 9.4 years ago by 16k • written 9.4 years ago by ▴ 30
1
vote
1
reply
2.0k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles rsamtools
updated 9.5 years ago by 25k • written 9.5 years ago by ▴ 10
2
votes
2
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3.1k
views
How to randomly sample BAM files
rsamtools genomicalignments genomicfiles
updated 10.4 years ago by 25k • written 10.4 years ago by ▴ 70
0
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0
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1.3k
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles
11.3 years ago Dan Tenenbaum ★ 8.2k
11 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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