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GenomicRange
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Need Help w/ Subset on GRangesList
GenomicRange
GenomicRanges
3 months ago
mat149
▴ 70
0
votes
1
reply
751
views
DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2
version3.16
installation
bioconductor
GenomicRange
updated 17 months ago by
James W. MacDonald
66k • written 17 months ago by
hong
• 0
1
vote
11
replies
927
views
Finding genes with loss of Heterozygosity
genomicrange
updated 4.1 years ago by
Kevin Blighe
★ 3.9k • written 4.1 years ago by
AZ
▴ 30
5
votes
2
replies
563
views
Intersecting two big dataframe
genomicrange
intersect
updated 4.1 years ago by
James W. MacDonald
66k • written 4.1 years ago by
AZ
▴ 30
4 results • Page
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Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
jovel_juan
▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Votes
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
Error when converting Seurat to SingleCellExperiment
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