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Graph
•
reset
0
votes
0
replies
754
views
toDotR ignores edgeData
graph
graph
17.2 years ago
Altmann, Michael
▴ 30
1
vote
4
replies
4.3k
views
Rgraphviz fontsize
GO
graph
Rgraphviz
GO
graph
Rgraphviz
updated 17.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 17.2 years ago by
daniel jupiter
▴ 80
0
votes
2
replies
1.7k
views
Adding a text label to the classvec colour bar in heatplot
Clustering
Cancer
graph
GLAD
Clustering
Cancer
graph
GLAD
updated 17.3 years ago by
Amy Mikhail
▴ 460 • written 17.3 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
4
replies
2.0k
views
Adding a text label to the classvec colour bar in heatplot
Clustering
Cancer
graph
Clustering
Cancer
graph
updated 17.3 years ago by
Amy Mikhail
▴ 460 • written 17.3 years ago by
Aedin Culhane
▴ 510
0
votes
0
replies
1.0k
views
Adding a text label to the classvec colour bar in heatplot
graph
graph
17.3 years ago
Amy Mikhail
▴ 460
0
votes
2
replies
1.3k
views
plot overlay
graph
graph
updated 17.4 years ago by
olszewski@atlas-biolabs.de
▴ 30 • written 17.4 years ago by
David Ruau
▴ 190
0
votes
1
reply
1.1k
views
updateGraph & deprecated edgemode slot
graph
graph
updated 17.4 years ago by
Tony Chiang
▴ 570 • written 17.4 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.4k
views
affycoretools vennSelect problem
Annotation
GO
Survival
probe
annotate
genefilter
affy
graph
limma
gcrma
annaffy
RBGL
17.4 years ago
Nick Henriquez
▴ 20
0
votes
2
replies
1.5k
views
affycoretools vennSelect problem
GO
Survival
annotate
genefilter
affy
graph
gcrma
annaffy
RBGL
GOstats
biomaRt
affyio
updated 17.4 years ago by
James W. MacDonald
68k • written 17.4 years ago by
PeadarÓGaora
▴ 30
0
votes
0
replies
902
views
parameters in graph.par in Rgraphviz
graph
graph
17.5 years ago
Paolo Innocenti
▴ 320
0
votes
2
replies
1.5k
views
heatmap and cluster with marray
graph
graph
updated 17.5 years ago by
Sean Davis
21k • written 17.5 years ago by
Abhilash Venu
▴ 340
0
votes
7
replies
1.9k
views
Pairs plots in lumi, plots look different?
Microarray
graph
Microarray
graph
updated 17.5 years ago by
Pan Du
★ 1.2k • written 17.5 years ago by
Julien Bauer
▴ 20
0
votes
1
reply
1.6k
views
Bug report: Help pages for degree (package graph) not displayed
Cancer
graph
SNAData
Cancer
graph
SNAData
updated 17.5 years ago by
Patrick Aboyoun
★ 1.6k • written 17.5 years ago by
Martin Morgan
25k
0
votes
0
replies
1.1k
views
Bug report: Help pages for degree (package graph) not displayed
graph
SNAData
graph
SNAData
17.6 years ago
Zembower, Kevin
▴ 50
0
votes
1
reply
979
views
can't load Rgraphviz under BioC 2.2 devel version
graph
Rgraphviz
graph
Rgraphviz
updated 17.6 years ago by
Florian Hahne
▴ 540 • written 17.6 years ago by
Luo Weijun
★ 1.6k
0
votes
3
replies
1.4k
views
two histograms in one graph
graph
graph
updated 17.6 years ago by
Tobias Straub
▴ 430 • written 17.6 years ago by
s.khalid@qmul.ac.uk
▴ 50
0
votes
8
replies
1.9k
views
two-line labels in GO graphs
GO
graph
GO
graph
updated 17.7 years ago by
Marc Carlson
★ 7.2k • written 17.7 years ago by
Robert Castelo
★ 3.4k
0
votes
3
replies
1.5k
views
oneChannelGUI problem
graph
oneChannelGUI
graph
oneChannelGUI
updated 17.7 years ago by
raffaele calogero
▴ 500 • written 17.7 years ago by
marco fabbri
▴ 320
0
votes
0
replies
1.3k
views
How to use the same node layout for a set of graph plots using graph and Rgraphviz?
Cancer
graph
Rgraphviz
Cancer
graph
Rgraphviz
17.8 years ago
Rand, Hugh
▴ 50
0
votes
2
replies
1.4k
views
fontsize in Rgraphviz
GO
graph
Rgraphviz
GO
graph
Rgraphviz
updated 17.8 years ago by
Florian Hahne
▴ 540 • written 17.8 years ago by
Mark W Kimpel
▴ 830
0
votes
0
replies
660
views
questions on lumi
graph
lumi
graph
lumi
17.9 years ago
Pan Du
★ 1.2k
0
votes
0
replies
892
views
GO graph plotting with some in color
GO
Clustering
graph
PROcess
GO
Clustering
graph
PROcess
18.0 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
1.0k
views
Edge color knowing only outgoing node
GO
graph
GO
graph
18.0 years ago
Loren Engrav
★ 1.0k
0
votes
5
replies
1.5k
views
GO graph plotting with some in color
GO
graph
Rgraphviz
GO
graph
Rgraphviz
18.0 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
1.2k
views
Problems with k-cliq definition and calculations using RBGL package
Proteomics
graph
RBGL
Proteomics
graph
RBGL
18.0 years ago
Chanchal Kumar
▴ 130
0
votes
1
reply
1.6k
views
Bioconductor 2.1 is released
SNP
Microarray
SAGE
Annotation
Bayesian
Regression
GUI
CGH
hgu95av2
graph
Rgraphviz
SNP
18.1 years ago
Hervé Pagès
16k
0
votes
2
replies
1.4k
views
slow graph methods
SystemsBiology
graph
SystemsBiology
graph
updated 18.1 years ago by
Seth Falcon
★ 7.4k • written 18.1 years ago by
Martin Morgan
25k
0
votes
2
replies
1.6k
views
problem with probes2tableBM
Annotation
GO
Survival
hgu133a2
annotate
genefilter
affy
graph
gcrma
matchprobes
GOstats
updated 18.1 years ago by
Steffen
▴ 500 • written 18.1 years ago by
Mayte Suarez-Farinas
▴ 510
0
votes
1
reply
946
views
graph package: how to combine two graphs to create a third?
graph
graph
updated 18.2 years ago by
Li.Long@isb-sib.ch
▴ 510 • written 18.2 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.2k
views
biomaRt -> XML::addNode masks graph
SystemsBiology
Cancer
graph
biomaRt
SystemsBiology
Cancer
graph
biomaRt
18.2 years ago
Seth Falcon
★ 7.4k
0
votes
7
replies
1.9k
views
slow insertions in to graphNEL object (24 hours for 16k nodes)
graph
graph
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Paul Shannon
★ 1.1k
0
votes
4
replies
2.6k
views
disagreement between biomaRt and topGO
GO
hgu133plus2
annotate
geneplotter
graph
Rgraphviz
PROcess
goTools
biomaRt
Category
GO
updated 18.2 years ago by
Steffen
▴ 500 • written 18.2 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
1.5k
views
Getting top level GO category for a list of genes
GO
graph
biomaRt
GO
graph
biomaRt
updated 18.2 years ago by
Paquet, Agnes
▴ 500 • written 18.2 years ago by
Palle Villesen BiRC
▴ 10
0
votes
7
replies
2.3k
views
problem with GOstats, developmental version?
GO
Survival
hgu95av2
annotate
affy
affydata
graph
Rgraphviz
limma
gcrma
matchprobes
GO
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Jenny Drnevich
★ 2.2k
0
votes
10
replies
2.7k
views
comparing GO lists
Annotation
GO
Cancer
graph
GOstats
Annotation
GO
Cancer
graph
GOstats
updated 18.3 years ago by
Ana Conesa
▴ 130 • written 18.3 years ago by
rgentleman
★ 5.5k
0
votes
5
replies
1.5k
views
how to store multiple relationships between nodes in graphNEL?
graph
graph
updated 18.3 years ago by
Seth Falcon
★ 7.4k • written 18.3 years ago by
Paul Shannon
★ 1.1k
0
votes
2
replies
2.7k
views
Rgraphviz - how to use node positions from one graph as node positions in another?
graph
graph
updated 18.3 years ago by
Li.Long@isb-sib.ch
▴ 510 • written 18.3 years ago by
Søren Højsgaard
▴ 50
0
votes
1
reply
1.3k
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer
Ruuid
tkWidgets
graph
GOstats
Cancer
Ruuid
tkWidgets
graph
GOstats
updated 18.3 years ago by
Alex
▴ 10 • written 18.3 years ago by
Seth Falcon
★ 7.4k
0
votes
0
replies
1.1k
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Ruuid
tkWidgets
graph
GOstats
Ruuid
tkWidgets
graph
GOstats
18.3 years ago
Michael Parisi
▴ 10
0
votes
11
replies
2.5k
views
'recursive default argument' error in GOENTREZID2GO
GO
Biobase
genefilter
graph
Category
GO
Biobase
genefilter
graph
Category
updated 18.4 years ago by
Seth Falcon
★ 7.4k • written 18.4 years ago by
Oleg Sklyar
▴ 260
0
votes
3
replies
1.2k
views
help with rendering layers in Rgraphviz
graph
Rgraphviz
graph
Rgraphviz
updated 18.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 18.4 years ago by
Mark W Kimpel
▴ 830
0
votes
9
replies
2.5k
views
problem with duplicateCorrelation and ExpressionSet objects
GO
Survival
cdf
Biobase
graph
limma
gcrma
annaffy
affyPLM
simpleaffy
biomaRt
Category
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.3k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray
GO
graph
goTools
Category
oligo
Microarray
GO
graph
goTools
Category
oligo
18.6 years ago
Paquet, Agnes
▴ 500
0
votes
5
replies
1.7k
views
Package "graph": bug in function addEdge
graph
graph
updated 18.6 years ago by
Seth Falcon
★ 7.4k • written 18.6 years ago by
Dirk Koschützki
▴ 20
0
votes
0
replies
1.4k
views
RBGL: bfs & dfs with directed graphs
GO
Biobase
annotate
geneplotter
graph
Rgraphviz
annaffy
RBGL
convert
GO
Biobase
graph
18.6 years ago
stephen edwards
▴ 10
0
votes
3
replies
2.3k
views
Can't get RCurl...
GO
Survival
annotate
genefilter
affy
graph
limma
GOstats
biomaRt
Category
affycoretools
updated 18.6 years ago by
James W. MacDonald
68k • written 18.6 years ago by
Jenny Drnevich
★ 2.2k
0
votes
1
reply
1.3k
views
topTable "resort.by" broken...
GO
Survival
Biobase
annotate
genefilter
affy
affydata
graph
gcrma
matchprobes
annaffy
updated 18.6 years ago by
Gordon Smyth
53k • written 18.6 years ago by
Jenny Drnevich
★ 2.2k
0
votes
1
reply
1.7k
views
question about limma2annaffy
GO
Survival
Biobase
annotate
genefilter
geneplotter
affy
affydata
graph
limma
annaffy
updated 18.6 years ago by
James W. MacDonald
68k • written 18.6 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
729
views
bugfix in graph::ftM2graphNEL
graph
graph
18.8 years ago
Wolfgang Huber
★ 13k
0
votes
4
replies
1.6k
views
ftM2graphNEL unexpected error
graph
graph
updated 18.8 years ago by
Seth Falcon
★ 7.4k • written 18.8 years ago by
Dan Bebber
▴ 50
360 results • Page
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Answer: After running samtools, the featureCounts command crashed.
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Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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