Showing : Graph • reset
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[Rgraphviz] Xfig file export bug
graph graph
15.7 years ago Sancar Adali ▴ 30
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866
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graph/graphNEL: edge properties from edge name
graph graph
15.7 years ago Gustavo Lacerda ▴ 40
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1
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845
views
ShortRead QA Feature
graph cycle graph cycle
updated 15.7 years ago by 25k • written 15.7 years ago by ★ 1.6k
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4
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1.4k
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RNA degradation plot
graph graph
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ★ 1.5k
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1
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5.5k
views
edgeR: pseudocounts, logConc and logFC
Proteomics graph edgeR Proteomics graph edgeR
updated 15.8 years ago by ★ 1.1k • written 15.8 years ago by ▴ 340
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1.6k
views
SPIA package
graph SPIA graph SPIA
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ▴ 200
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3
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1.5k
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graph object question
graph graph
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ▴ 930
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1
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3.5k
views
what does mean of Densities on y axis in the graph generated by plotDensities
graph graph
updated 15.9 years ago by ▴ 400 • written 15.9 years ago by ▴ 100
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1
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1.9k
views
Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 16.0 years ago by ★ 13k • written 16.0 years ago by 21k
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1.4k
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Bioconductor Digest, Vol 83, Issue 23
Bayesian ROC graph limma Bayesian ROC graph limma
16.0 years ago M. Carmen Ruiz de Villa ▴ 10
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topGO results visualisation question
graph topGO graph topGO
16.0 years ago Iain Gallagher ▴ 930
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3
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1.9k
views
RpsiXML issues with latest Biogrid release files
GO Organism Arabidopsis thaliana graph RpsiXML GO Organism Arabidopsis thaliana graph
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by ▴ 60
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1
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1.4k
views
KEGGgraph query
Pathways graph KEGGgraph Pathways graph KEGGgraph
updated 16.1 years ago by ▴ 340 • written 16.1 years ago by ▴ 270
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1
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1.6k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 16.2 years ago by ▴ 430 • written 16.2 years ago by ▴ 410
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2
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1.1k
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Does hist (affy) function work on probe-pair values or probe-set values?
Preprocessing probe graph Preprocessing probe graph
updated 16.3 years ago by ★ 2.0k • written 16.3 years ago by ▴ 840
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771
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info
graph Rgraphviz graph Rgraphviz
16.3 years ago Sean Davis 21k
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1
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1.2k
views
Hypergraph representation of reactions
Network graph hypergraph Network graph hypergraph
updated 16.3 years ago by ★ 5.5k • written 16.3 years ago by ▴ 570
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688
views
info
graph Rgraphviz graph Rgraphviz
16.3 years ago vikas sharma ▴ 20
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1.2k
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rgraphviz: node attributes of a layout graph
graph Rgraphviz graph Rgraphviz
16.3 years ago Laurin Müller ▴ 10
0
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5
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1.9k
views
Compiling graph on solaris
graph graph
updated 16.3 years ago by ▴ 50 • written 16.3 years ago by ▴ 400
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2
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2.0k
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Rgraphviz: interactive graphs, how to map coordinates to plotted graph?
graph Rgraphviz graph Rgraphviz
updated 16.4 years ago by ▴ 540 • written 16.4 years ago by ▴ 60
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1
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1.5k
views
Rgraphviz: interactive graphs, how to map coordinates to plotted graph?
graph Rgraphviz graph Rgraphviz
updated 16.4 years ago by ★ 13k • written 16.4 years ago by ▴ 60
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0
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920
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snapCGH plotting
GO graph snapCGH GO graph snapCGH
16.4 years ago Boris Umylny ▴ 120
0
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0
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1.4k
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Rgraphviz node size + arrowhead size
graph Rgraphviz graph Rgraphviz
16.5 years ago Yaniv Semel ▴ 60
0
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0
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1.2k
views
plotProfiles (goProfiles) and bitmap
GO graph goProfiles GO graph goProfiles
16.6 years ago Jean-Pierre Desvignes ▴ 60
0
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1
reply
911
views
help ! microarray 3d smoothed surface plot
Microarray graph Microarray graph
updated 16.6 years ago by 6.7k • written 16.6 years ago by ▴ 540
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2
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2.0k
views
FlowViz graphics problems
Microarray Visualization graph flowCore flowViz Microarray Visualization graph flowCore
updated 16.6 years ago by ▴ 340 • written 16.6 years ago by ▴ 20
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1.7k
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.7 years ago Min-Han Tan ▴ 40
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1.1k
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Showing two datasets in the same plot
graph graph
updated 16.7 years ago by ★ 2.3k • written 16.7 years ago by ▴ 100
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4
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1.5k
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Rredland installation difficulties
Pathways graph Rredland Pathways graph Rredland
updated 16.7 years ago by ★ 1.6k • written 16.7 years ago by ★ 1.1k
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1
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1.1k
views
GenomeGraphs
Cancer graph Cancer graph
updated 16.7 years ago by ▴ 970 • written 16.7 years ago by ▴ 140
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3
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3.2k
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Visualizing KEGG pathways
Pathways graph Pathways graph
updated 16.7 years ago by ▴ 400 • written 16.7 years ago by ★ 1.1k
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0
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1.5k
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Bioconductor 2.4 is released
Microarray qPCR Metabolomics Annotation Normalization graph flowCore Microarray qPCR
16.7 years ago Patrick Aboyoun ★ 1.6k
0
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0
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1.7k
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limma Time Course Experiments question
graph limma SANTA graph limma SANTA
16.8 years ago Marcelo Laia ▴ 450
0
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1
reply
890
views
Problems with combineNodes in graph
graph graph
updated 16.8 years ago by ▴ 540 • written 16.8 years ago by ▴ 10
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0
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1.2k
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GenomeGraphs plot colours (bug?)
graph GenomeGraphs graph GenomeGraphs
16.9 years ago Tim Rayner ▴ 270
0
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5
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2.1k
views
biomaRt and Ensembl probe set filter....
cdf probe affy graph limma biomaRt cdf probe affy graph limma biomaRt
updated 17.0 years ago by 68k • written 17.0 years ago by ▴ 110
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0
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707
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Problem with package "GenomeGraphs"
Visualization graph Visualization graph
17.0 years ago Philippe Thomas ▴ 30
0
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4
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2.0k
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error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 17.0 years ago by ▴ 90 • written 17.0 years ago by ▴ 160
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qPCR NEWS - December 2008
qPCR graph PROcess microRNA qPCR graph PROcess microRNA
17.1 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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0
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768
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Question about graph package
Cancer graph Rgraphviz Cancer graph Rgraphviz
17.1 years ago Florian Hahne ▴ 540
0
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0
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1.6k
views
sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
17.1 years ago Dick Beyer ★ 1.4k
0
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0
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1.0k
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Fwd: snapCGH: "Error in segments(...
Genetics graph Genetics graph
17.1 years ago Radek Blatny ▴ 30
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0
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1.3k
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KEGG pathway layout/rendering
Pathways graph PROcess Pathways graph PROcess
17.2 years ago Sim, Fraser ▴ 350
2
votes
0
replies
1.8k
views
Problem using Rgraphviz (edge weights going missing).
GO graph Rgraphviz GO graph Rgraphviz
17.2 years ago Dan Bolser ▴ 40
0
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2
replies
1.5k
views
Simpleaffy: how are 3/5 ratios calculated
graph simpleaffy PROcess graph simpleaffy PROcess
updated 17.3 years ago by ▴ 320 • written 17.3 years ago by ▴ 50
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0
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1.2k
views
Question on node attribute fontsize in Rgraphviz
graph Rgraphviz graph Rgraphviz
17.3 years ago Claudio Lottaz ▴ 40
0
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1
reply
877
views
labels on graph
GO graph GO graph
updated 17.3 years ago by 21k • written 17.3 years ago by ★ 1.1k
0
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1
reply
840
views
Is from and to reversed in the toDotR function in the graph package?
graph graph
updated 17.3 years ago by 6.7k • written 17.3 years ago by ▴ 30
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0
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1.8k
views
topGO and font size in the graph plots
graph Rgraphviz topGO graph Rgraphviz topGO
17.3 years ago michael watson IAH-C ★ 3.4k
360 results • Page 4 of 8
Recent ...
Replies
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 10
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Votes
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
A: Conversion from counts to FPKM
Answer: Incosistencies in buildSNNGraph() function
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Great Question to fl ▴ 20
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Popular Question to Gordon Smyth 53k
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Popular Question to Hervé Pagès 16k
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