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Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
17 months ago • updated 7 months ago
Daniel E. Weeks
▴ 30
1
vote
3
replies
1.4k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 6 months ago by
Robert Ivanek
▴ 730 • written 3.1 years ago by
ltzhou
• 0
1
vote
3
replies
631
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer
Gviz
updated 6 months ago by
Hervé Pagès
16k • written 7 months ago by
yujin
▴ 10
0
votes
3
replies
807
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 8 months ago by
Robert Ivanek
▴ 730 • written 8 months ago by
Michael
• 0
1
vote
2
replies
1.0k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 4 weeks ago by
Tim Peters
▴ 180 • written 15 months ago by
jose.ramirez1
▴ 10
0
votes
1
reply
222
views
GC content track on GVIZ
Gviz
updated 3 months ago by
James W. MacDonald
66k • written 3 months ago by
ilaria.maurizio
• 0
1
vote
0
replies
471
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
6 months ago
yujin
▴ 10
0
votes
0
replies
382
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
6 months ago
dbsgtk
• 0
8 results • Page
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Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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