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GenomicAlignments - extracting sequence signatures from bam file
bam file HIV cytosine
8.2 years ago achaillon • 0
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Job: Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job bioinformatics immunology HIV Job
9.0 years ago • updated 8.7 years ago Ragon Institute of MGH, MIT and Harvard • 0
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
13.1 years ago SSc Array Core ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
13.2 years ago Porterfield, Toni ▴ 10
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Correlation analysis
Microbiome HIV Microbiome HIV
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 20
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eBayes error
HIV HIV
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 570
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Rtreemix (NEW package)
Cancer HIV Rtreemix Cancer HIV Rtreemix
17.6 years ago Jasmina Bogojeska ▴ 30
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postdoc position available at FHCRC
Cancer HIV Cancer HIV
17.9 years ago Harlan Robins ▴ 10
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Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics HIV Genetics HIV
19.1 years ago Adrian Alexa ▴ 400
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4
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Using limma with contrast matrix ,replicate spots, donor effects
HIV limma HIV limma
updated 20.9 years ago by 53k • written 20.9 years ago by ▴ 120
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Re: NA's
HIV HIV
23.7 years ago rgentleman ★ 5.5k
11 results • Page 1 of 1
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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