Bioconductor HTseq

Showing : HTseq • reset

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1.3k

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DEXSeq HTSeq R

2.5 years ago • updated 2.4 years ago yr542 • 0

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1.8k

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DESeq2 microRNA HTSeq

3.1 years ago abhay.kanodia • 0

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1.3k

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by abhay.kanodia • 0

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1.3k

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DESeq2 htseq DEGseq RNASeq read

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by CP • 0

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1.7k

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software error HTSeq installation

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by eric33150 • 0

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5.4k

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voom htseq edgeR limma RNASeq123

updated 7.0 years ago by Gordon Smyth 53k • written 8.6 years ago by wd ▴ 30

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2.1k

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DEXSeq dexseq_count htseq

8.9 years ago mat.lesche ▴ 110

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2.6k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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