Bioconductor HTseq

Showing : HTseq • reset

votes

replies

1.2k

views

DEXSeq HTSeq R

2.3 years ago • updated 2.2 years ago yr542 • 0

vote

replies

1.7k

views

DESeq2 microRNA HTSeq

2.9 years ago abhay.kanodia • 0

votes

1.3k

views

DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by abhay.kanodia • 0

votes

replies

1.3k

views

DESeq2 htseq DEGseq RNASeq read

updated 3.0 years ago by Michael Love 43k • written 3.1 years ago by CP • 0

votes

replies

1.6k

views

software error HTSeq installation

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by eric33150 • 0

votes

replies

5.3k

views

voom htseq edgeR limma RNASeq123

updated 6.9 years ago by Gordon Smyth 53k • written 8.5 years ago by wd ▴ 30

votes

2.0k

views

DEXSeq dexseq_count htseq

8.8 years ago mat.lesche ▴ 110

vote

replies

2.5k

views

HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k

There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …

Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60

Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!

Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40

Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…

Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0

I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/

Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by Kevin Blighe ★ 4.0k

My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…

Votes

Answer: Identifying differentially expressed genes in individual samples from a large co

Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction

Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Comment: Error installing Seqinfo

Awards • All