Bioconductor HTseq

Showing : HTseq • reset

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822

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DEXSeq HTSeq R

15 months ago • updated 14 months ago yr542 • 0

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1.3k

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DESeq2 microRNA HTSeq

22 months ago abhay.kanodia • 0

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967

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 23 months ago by Michael Love 42k • written 24 months ago by abhay.kanodia • 0

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918

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DESeq2 htseq DEGseq RNASeq read

updated 2.0 years ago by Michael Love 42k • written 2.0 years ago by CP • 0

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1.3k

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software error HTSeq installation

updated 4.7 years ago by Martin Morgan 25k • written 4.7 years ago by eric33150 • 0

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4.8k

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voom htseq edgeR limma RNASeq123

updated 5.8 years ago by Gordon Smyth 51k • written 7.4 years ago by wd ▴ 30

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1.7k

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DEXSeq dexseq_count htseq

7.7 years ago mat.lesche ▴ 110

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2.1k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: Volcano plot has many values around zero by Michael Love 42k

It's positive over zero or nearly so.

Answer: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.

Comment: Volcano plot has many values around zero by mjun • 0

Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks

Comment: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…

Votes

Comment: Weird looking volcano plot

Volcano plot has many values around zero

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

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Popular Question to Dario Strbenac ★ 1.5k

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k