Bioconductor HTseq

Showing : HTseq • reset

votes

replies

1.1k

views

DEXSeq HTSeq R

2.1 years ago • updated 24 months ago yr542 • 0

vote

replies

1.6k

views

DESeq2 microRNA HTSeq

2.7 years ago abhay.kanodia • 0

votes

1.2k

views

DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by abhay.kanodia • 0

votes

replies

1.2k

views

DESeq2 htseq DEGseq RNASeq read

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by CP • 0

votes

replies

1.5k

views

software error HTSeq installation

updated 5.5 years ago by Martin Morgan 25k • written 5.5 years ago by eric33150 • 0

votes

replies

5.2k

views

voom htseq edgeR limma RNASeq123

updated 6.6 years ago by Gordon Smyth 52k • written 8.2 years ago by wd ▴ 30

votes

1.9k

views

DEXSeq dexseq_count htseq

8.5 years ago mat.lesche ▴ 110

vote

replies

2.4k

views

HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

Awards • All

Popular Question to Robert Castelo ★ 3.4k