Bioconductor HTseq

Showing : HTseq • reset

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1.3k

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DEXSeq HTSeq R

2.5 years ago • updated 2.4 years ago yr542 • 0

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1.8k

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DESeq2 microRNA HTSeq

3.1 years ago abhay.kanodia • 0

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1.3k

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by abhay.kanodia • 0

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1.3k

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DESeq2 htseq DEGseq RNASeq read

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by CP • 0

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1.7k

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software error HTSeq installation

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by eric33150 • 0

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5.4k

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voom htseq edgeR limma RNASeq123

updated 7.0 years ago by Gordon Smyth 53k • written 8.6 years ago by wd ▴ 30

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2.1k

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DEXSeq dexseq_count htseq

8.9 years ago mat.lesche ▴ 110

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2.6k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k

Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …

Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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